Glyma13g37461 - SoyBase

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Report for Sequence Feature Glyma13g37461

Feature Type:	gene_model
Chromosome:	Gm13
Start:	38537832
stop:	38541722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g37461

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14830	AT	Annotation by Michelle Graham. TAIR10: Regulator of Vps4 activity in the MVB pathway protein \| chr2:6362524-6365818 FORWARD LENGTH=454	SoyBase	E_val: 5.00E-60	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12161	Panther	UNCHARACTERIZED DUF292	JGI		ISS
PTHR12161:SF9	Panther	UNKNOWN PROTEIN	JGI		ISS
PF03398	PFAM	Regulator of Vps4 activity in the MVB pathway	JGI		ISS
UniRef100_G7JSJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IST1-like protein n=1 Tax=Medicago truncatula RepID=G7JSJ0_MEDTR	SoyBase	E_val: 5.00E-96	ISS
UniRef100_I1LUF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LUF3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g37461

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g37461 not represented in the dataset	Glyma13g37461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g37461

Paralog	Evidence	Comments
Glyma12g33010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g37461 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g298700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g37461

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g37461

Limit To All Plant Sequences

>Glyma13g37461.2   sequence type=transcript   gene model=Glyma13g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTGTTTTGAGCCATTCACCAAAAAAAAAAGTTTCAAGTTGTTTTGGCTATCGTGGATATGAACTCAGAGAATTTCATGACCGTATTCTTCTAGCTTTTTTCGCAGGGAATGTTACTAAGCAGTTTGCAAAATAGACGTGTCCAAAAAACTGAGGTGGAGTAGTGGAACAGTTATTTTCCAAAGAGACCACAACTGTCTCCTTCTTCCTTCTTTCAAATTAAGTCCCACTAATTTGTCACAGTCTGCATTTTTCAAACCGCTCTTATCTAAATTTGTGGTGGTTCAGTTACTTACTCTACCATGATCTTCCCTCACTTTTTTTCTCATTTCTGCTACTACTCTTTATATCCATAATAACCAGAAAGTGGCATCAAGTTATAGGTATGTTTGACATATTGTTCGGTTGGTCCAAAGCTTCCAAATGTAAGAAGGCGATCAAACGAGCCCGGTGCCGGCTCAGGCTACTCAAGAACAAGAGGCAGGCAATAGCAAGGCAACTGAGAAAGGACTTGGCTGAGCTAATACAAAGTGGCCATGAAGAAACTGCATTTAACCGGGTGGAACAGCTTATGGGAGATGAAAGCTTAACAGCTGCGTATGAATTGTTAGATCACTTCTGCGAATTTATCCTTACGCAACTCTCCTACATCCAGAGGCACAAGGACTGTCCAAATGATATTAATGAAGCAGTCTCTAGTCTTATATTTGCTTCTGCAAGATGTGGGGATCTTCCTGAGCTCGGTGTCATCAGAAAGCTCTTTGGACAGCGTTATGGTGAGAGGTTTGCAACTGCAGCTGTAGAGCTATCACCAGGAAATCTAGTAAACAAACAATTGAAAGAGAACCTGTCAGTGAAATCTGTGCCGGATGATATGAAGTACAGAATGGTGGATGAAATAGCCAGGGATAACTGTCTGCAACAACAGGTTTTAGCCATACAATATTACCCTGATTGGCAACAAGTGCAGGTGAAAGAAAATAAAGGGTATCAACTAGTGGAGAGTGATGCCAAAATAATTGACATTATTTCAGGATTTAAAGTTCACCCTTCAGAGATTGAAGAGATAACAAGAGATGTCACATGTGTTAATCCATCCATTTCCAAACAAAGTGATTCTTGTTCTCTGCCAGAACCAAACTTAGCTGATACTTCAGCTATGGCGTCTGCGGTTCAGCAATATCCCCCATATTTCCTGAGATATCCTTTGGAGAAGAAAGTAGTAGATATAGACTTTCCTGAGCTACTTTCTTCTCTAAATTTTGATTTGCAAAACAAGGGGGAAAGAATGGCCTTAACATCTTCTGCACAAAGAGTGAGTTTCCCTCCCTATTCTGAAGAAATGGTAGATTATGTGGATGGCATTAAGGAGTTTTCTGTACCAAATGATGGTGGCTGCCAGGACCAAATGCTATTTAAGTTCAGATCTTCTGGTCTATCCAGGAGACAAAAAACTCAATTTGGTTATGATAGTGATATTGGTCAAGATGGATCAGAGAGTGAGAACTCAAGCACAAGGACCTCAACAAAGAGCAAAAGGAGACCTGAGAAAAGATCAAGAAGGAGATCATCCTCCATGGAAAACCTTGGCCTTATGGATATTGGATACATGATATATTATCACAAGCCATGCAAAAGTCCCTTAGCTCATAAGCATAGTAGCAGAAAGCACCATAAGCCTTCACTAGAAGGAATTTCCCCATCAAGTTACGGCCAGAAGAGACTGATGCTACATGGTTTCTCAGAAGAGGGAAATGTTTTACAGTCATGTCACAGCCAAGATGGCACAAGGAGAAAACTTTTCAACTTTAAAATGAGTGGCTGCAGCTTGGACCAACCTTGCTATTTTTGCCTACATGATGATGAAGACTATTTGGAACCTCAATCAATGAAGCAAAAGAGAGGGATCAGAGCCACACATGCTCAACAAGAACTTCTGCCTGATGAATGTTGCCACTGCCAACTCTTTTGTGATAATGAGTTGAACCAAGGAATTGAATTGGTTACCATCCCTCGGAGACCAAATAGGAGGAGTTATAGTGGTGCAGCTGAGTATCATGTATTCAACTACCAGGATTGCCAAGCTGGTAATGGAAACAATGAAACAAAAGAAAAAATCTCTGCTTCTCCCAAAGTTTCCAATCCAAGGACTGGTGGTTCCTCAACAATAGTAGAAACAGAAGCTACCTATTCAAGGGCCATGACAATGCCCCAAGAGAGGCACAGAAACAGCAAAGATAAGATGTTAAGGACATATTCATGTCCTTCTCCACATCCTATTCATGTTCATCCTAAGTTGCCAGACTATGATGACATTGCTGCCAAGTTCACTGCTCTCAAGAAAGAGCGCATGGAAAACATGGACCGCAGTAAGGACCAAAACTAGAGGAGGCATATATACAGCATTTGTATAATACTGCCCTATTAAATTTTGAATCACTCATTCAAATATTATTTGAGCTTGTTTTTAGATATCACTAAATATTCTTTGGCCTTCATCCATGTAAGATTACAATTTAATTTTTACTATCTGTAAGAAAAATGAGAAGGTTGCCAATCAATCTAACAAATTAAAAATTAGATTGAGATTTTCAT

Coding sequences of Glyma13g37461

Limit To All Plant Sequences

>Glyma13g37461.1   sequence type=CDS   gene model=Glyma13g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGACATATTGTTCGGTTGGTCCAAAGCTTCCAAATGTAAGAAGGCGATCAAACGAGCCCGGTGCCGGCTCAGGCTACTCAAGAACAAGAGGCAGGCAATAGCAAGGCAACTGAGAAAGGACTTGGCTGAGCTAATACAAAGTGGCCATGAAGAAACTGCATTTAACCGGGTGGAACAGCTTATGGGAGATGAAAGCTTAACAGCTGCGTATGAATTGTTAGATCACTTCTGCGAATTTATCCTTACGCAACTCTCCTACATCCAGAGGCACAAGGACTGTCCAAATGATATTAATGAAGCAGTCTCTAGTCTTATATTTGCTTCTGCAAGATGTGGGGATCTTCCTGAGCTCGGTGTCATCAGAAAGCTCTTTGGACAGCGTTATGGTGAGAGGTTTGCAACTGCAGCTGTAGAGCTATCACCAGGAAATCTAGTAAACAAACAATTGAAAGAGAACCTGTCAGTGAAATCTGTGCCGGATGATATGAAGTACAGAATGGTGGATGAAATAGCCAGGGATAACTGTCTGCAACAACAGGTTTTAGCCATACAATATTACCCTGATTGGCAACAAGTGCAGGTGAAAGAAAATAAAGGGTATCAACTAGTGGAGAGTGATGCCAAAATAATTGACATTATTTCAGGATTTAAAGTTCACCCTTCAGAGATTGAAGAGATAACAAGAGATGTCACATGTGTTAATCCATCCATTTCCAAACAAAGTGATTCTTGTTCTCTGCCAGAACCAAACTTAGCTGATACTTCAGCTATGGCGTCTGCGGTTCAGCAATATCCCCCATATTTCCTGAGATATCCTTTGGAGAAGAAAGTAGTAGATATAGACTTTCCTGAGCTACTTTCTTCTCTAAATTTTGATTTGCAAAACAAGGGGGAAAGAATGGCCTTAACATCTTCTGCACAAAGAGTGAGTTTCCCTCCCTATTCTGAAGAAATGGTAGATTATGTGGATGGCATTAAGGAGTTTTCTGTACCAAATGATGGTGGCTGCCAGGACCAAATGCTATTTAAGTTCAGATCTTCTGGTCTATCCAGGAGACAAAAAACTCAATTTGGTTATGATAGTGATATTGGTCAAGATGGATCAGAGAGTGAGAACTCAAGCACAAGGACCTCAACAAAGAGCAAAAGGAGACCTGAGAAAAGATCAAGAAGGAGATCATCCTCCATGGAAAACCTTGGCCTTATGGATATTGGATACATGATATATTATCACAAGCCATGCAAAAGTCCCTTAGCTCATAAGCATAGTAGCAGAAAGCACCATAAGCCTTCACTAGAAGGAATTTCCCCATCAAGTTACGGCCAGAAGAGACTGATGCTACATGGTTTCTCAGAAGAGGGAAATGTTTTACAGTCATGTCACAGCCAAGATGGCACAAGGAGAAAACTTTTCAACTTTAAAATGAGTGGCTGCAGCTTGGACCAACCTTGCTATTTTTGCCTACATGATGATGAAGACTATTTGGAACCTCAATCAATGAAGCAAAAGAGAGGGATCAGAGCCACACATGCTCAACAAGAACTTCTGCCTGATGAATGTTGCCACTGCCAACTCTTTTGTGATAATGAGTTGAACCAAGGAATTGAATTGGTTACCATCCCTCGGAGACCAAATAGGAGGAGTTATAGTGGTGCAGCTGAGTATCATGTATTCAACTACCAGGATTGCCAAGCTGGTAATGGAAACAATGAAACAAAAGAAAAAATCTCTGCTTCTCCCAAAGTTTCCAATCCAAGGACTGGTGGTTCCTCAACAATAGTAGAAACAGAAGCTACCTATTCAAGGGCCATGACAATGCCCCAAGAGAGGCACAGAAACAGCAAAGATAAGATGTTAAGGACATATTCATGTCCTTCTCCACATCCTATTCATGTTCATCCTAAGTTGCCAGACTATGATGACATTGCTGCCAAGTTCACTGCTCTCAAGAAAGAGCGCATGGAAAACATGGACCGCAGTAAGGACCAAAACTAG

>Glyma13g37461.2   sequence type=CDS   gene model=Glyma13g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGACATATTGTTCGGTTGGTCCAAAGCTTCCAAATGTAAGAAGGCGATCAAACGAGCCCGGTGCCGGCTCAGGCTACTCAAGAACAAGAGGCAGGCAATAGCAAGGCAACTGAGAAAGGACTTGGCTGAGCTAATACAAAGTGGCCATGAAGAAACTGCATTTAACCGGGTGGAACAGCTTATGGGAGATGAAAGCTTAACAGCTGCGTATGAATTGTTAGATCACTTCTGCGAATTTATCCTTACGCAACTCTCCTACATCCAGAGGCACAAGGACTGTCCAAATGATATTAATGAAGCAGTCTCTAGTCTTATATTTGCTTCTGCAAGATGTGGGGATCTTCCTGAGCTCGGTGTCATCAGAAAGCTCTTTGGACAGCGTTATGGTGAGAGGTTTGCAACTGCAGCTGTAGAGCTATCACCAGGAAATCTAGTAAACAAACAATTGAAAGAGAACCTGTCAGTGAAATCTGTGCCGGATGATATGAAGTACAGAATGGTGGATGAAATAGCCAGGGATAACTGTCTGCAACAACAGGTTTTAGCCATACAATATTACCCTGATTGGCAACAAGTGCAGGTGAAAGAAAATAAAGGGTATCAACTAGTGGAGAGTGATGCCAAAATAATTGACATTATTTCAGGATTTAAAGTTCACCCTTCAGAGATTGAAGAGATAACAAGAGATGTCACATGTGTTAATCCATCCATTTCCAAACAAAGTGATTCTTGTTCTCTGCCAGAACCAAACTTAGCTGATACTTCAGCTATGGCGTCTGCGGTTCAGCAATATCCCCCATATTTCCTGAGATATCCTTTGGAGAAGAAAGTAGTAGATATAGACTTTCCTGAGCTACTTTCTTCTCTAAATTTTGATTTGCAAAACAAGGGGGAAAGAATGGCCTTAACATCTTCTGCACAAAGAGTGAGTTTCCCTCCCTATTCTGAAGAAATGGTAGATTATGTGGATGGCATTAAGGAGTTTTCTGTACCAAATGATGGTGGCTGCCAGGACCAAATGCTATTTAAGTTCAGATCTTCTGGTCTATCCAGGAGACAAAAAACTCAATTTGGTTATGATAGTGATATTGGTCAAGATGGATCAGAGAGTGAGAACTCAAGCACAAGGACCTCAACAAAGAGCAAAAGGAGACCTGAGAAAAGATCAAGAAGGAGATCATCCTCCATGGAAAACCTTGGCCTTATGGATATTGGATACATGATATATTATCACAAGCCATGCAAAAGTCCCTTAGCTCATAAGCATAGTAGCAGAAAGCACCATAAGCCTTCACTAGAAGGAATTTCCCCATCAAGTTACGGCCAGAAGAGACTGATGCTACATGGTTTCTCAGAAGAGGGAAATGTTTTACAGTCATGTCACAGCCAAGATGGCACAAGGAGAAAACTTTTCAACTTTAAAATGAGTGGCTGCAGCTTGGACCAACCTTGCTATTTTTGCCTACATGATGATGAAGACTATTTGGAACCTCAATCAATGAAGCAAAAGAGAGGGATCAGAGCCACACATGCTCAACAAGAACTTCTGCCTGATGAATGTTGCCACTGCCAACTCTTTTGTGATAATGAGTTGAACCAAGGAATTGAATTGGTTACCATCCCTCGGAGACCAAATAGGAGGAGTTATAGTGGTGCAGCTGAGTATCATGTATTCAACTACCAGGATTGCCAAGCTGGTAATGGAAACAATGAAACAAAAGAAAAAATCTCTGCTTCTCCCAAAGTTTCCAATCCAAGGACTGGTGGTTCCTCAACAATAGTAGAAACAGAAGCTACCTATTCAAGGGCCATGACAATGCCCCAAGAGAGGCACAGAAACAGCAAAGATAAGATGTTAAGGACATATTCATGTCCTTCTCCACATCCTATTCATGTTCATCCTAAGTTGCCAGACTATGATGACATTGCTGCCAAGTTCACTGCTCTCAAGAAAGAGCGCATGGAAAACATGGACCGCAGTAAGGACCAAAACTAG

Predicted protein sequences of Glyma13g37461

Limit To All Plant Sequences

>Glyma13g37461.1   sequence type=predicted peptide   gene model=Glyma13g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFDILFGWSKASKCKKAIKRARCRLRLLKNKRQAIARQLRKDLAELIQSGHEETAFNRVEQLMGDESLTAAYELLDHFCEFILTQLSYIQRHKDCPNDINEAVSSLIFASARCGDLPELGVIRKLFGQRYGERFATAAVELSPGNLVNKQLKENLSVKSVPDDMKYRMVDEIARDNCLQQQVLAIQYYPDWQQVQVKENKGYQLVESDAKIIDIISGFKVHPSEIEEITRDVTCVNPSISKQSDSCSLPEPNLADTSAMASAVQQYPPYFLRYPLEKKVVDIDFPELLSSLNFDLQNKGERMALTSSAQRVSFPPYSEEMVDYVDGIKEFSVPNDGGCQDQMLFKFRSSGLSRRQKTQFGYDSDIGQDGSESENSSTRTSTKSKRRPEKRSRRRSSSMENLGLMDIGYMIYYHKPCKSPLAHKHSSRKHHKPSLEGISPSSYGQKRLMLHGFSEEGNVLQSCHSQDGTRRKLFNFKMSGCSLDQPCYFCLHDDEDYLEPQSMKQKRGIRATHAQQELLPDECCHCQLFCDNELNQGIELVTIPRRPNRRSYSGAAEYHVFNYQDCQAGNGNNETKEKISASPKVSNPRTGGSSTIVETEATYSRAMTMPQERHRNSKDKMLRTYSCPSPHPIHVHPKLPDYDDIAAKFTALKKERMENMDRSKDQN*

>Glyma13g37461.2   sequence type=predicted peptide   gene model=Glyma13g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFDILFGWSKASKCKKAIKRARCRLRLLKNKRQAIARQLRKDLAELIQSGHEETAFNRVEQLMGDESLTAAYELLDHFCEFILTQLSYIQRHKDCPNDINEAVSSLIFASARCGDLPELGVIRKLFGQRYGERFATAAVELSPGNLVNKQLKENLSVKSVPDDMKYRMVDEIARDNCLQQQVLAIQYYPDWQQVQVKENKGYQLVESDAKIIDIISGFKVHPSEIEEITRDVTCVNPSISKQSDSCSLPEPNLADTSAMASAVQQYPPYFLRYPLEKKVVDIDFPELLSSLNFDLQNKGERMALTSSAQRVSFPPYSEEMVDYVDGIKEFSVPNDGGCQDQMLFKFRSSGLSRRQKTQFGYDSDIGQDGSESENSSTRTSTKSKRRPEKRSRRRSSSMENLGLMDIGYMIYYHKPCKSPLAHKHSSRKHHKPSLEGISPSSYGQKRLMLHGFSEEGNVLQSCHSQDGTRRKLFNFKMSGCSLDQPCYFCLHDDEDYLEPQSMKQKRGIRATHAQQELLPDECCHCQLFCDNELNQGIELVTIPRRPNRRSYSGAAEYHVFNYQDCQAGNGNNETKEKISASPKVSNPRTGGSSTIVETEATYSRAMTMPQERHRNSKDKMLRTYSCPSPHPIHVHPKLPDYDDIAAKFTALKKERMENMDRSKDQN*

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