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Report for Sequence Feature Glyma13g37395

Feature Type:gene_model
Chromosome:Gm13
Start:38493760
stop:38496722
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g37395
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28250AT Annotation by Michelle Graham. TAIR10: expansin B3 | chr4:14000446-14001945 REVERSE LENGTH=264 SoyBaseE_val: 8.00E-126ISS
GO:0006949GO-bp Annotation by Michelle Graham. GO Biological Process: syncytium formation SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009828GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0019953GO-bp Annotation by Michelle Graham. GO Biological Process: sexual reproduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
PF01357PFAM Pollen allergen JGI ISS
PF03330PFAM Rare lipoprotein A (RlpA)-like double-psi beta-barrel JGI ISS
UniRef100_H9TN51UniRef Annotation by Michelle Graham. Best UniRef hit: Expansin B protein n=2 Tax=Glycine max RepID=H9TN51_SOYBN SoyBaseE_val: 0ISS
UniRef100_H9TN51UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expansin B protein n=2 Tax=Glycine max RepID=H9TN51_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma13g37395
LocusGene SymbolProtein Name
EXPB9 beta-expansin gene 9

Expression Patterns of Glyma13g37395
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g37395 not represented in the dataset
Glyma13g37395 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g37395
ParalogEvidenceComments
Glyma12g33070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g37395 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g298100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g37395
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g37395
>Glyma13g37395.1   sequence type=CDS   gene model=Glyma13g37395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTGCCAGCGCTTCTCCGCCGTGCTTTTTCTAAGCTTATGCTTTAGAATTGCGCAAGTATACGCGCACGGGGATTCTGATCTGGACGAACATTGGTACACCGGAACCGCCACGTGGTACGGCGACCCCGAAGGCAACGGTAGCAACGGAGGGGCATGTGGGTATGGTACGTTGGTGGACGTGAAGCCTTTGAAGGGAAGGGTGGCAGCAGTGGGGCCAGTGCTGTTTAAGAAGGGTGAAGGTTGTGGTGCTTGCTATAAGGTCAAGTGTTTGGACCGTAGCATTTGTTCCAAACGGGCAGTGACGGTTATAATAACCGATGAGTGCCCGGGCTGTCGGACTGACCGAACGCACTTCGACCTCAGTGGCTCTGCCTTTGGCCGCATGGCGCTTTCGGGTGAAAACGTTAAGCTCAGAAACCGAGGTGAAATCCCAATCCTTTATCGAAGAGCATCATGCAAGTATGGTGGCAAAAACATTGTCTTCCATGTCAATGAAGGTTCCACACCTTTTTGGCTATCTCTTCAGGTGGAGTTTCAAAATGGAGATGGGGTGATTGGCTCCATGCATATACAACAGGCAGGGTCGAGTGAGTGGCTGCAGATGAAGCGTGAATGGGGTGCAAATTGGTGCATCATTAAGGGGCCATTAAAAGGACCTTTCTCTGTTAAGCTAAGCACATCCACAGGGAAAAGCCTCATTGCCAAAGATGTTATTCCAAGCAATTGGGCTCCAAAAGCCAGTTATACTTCTCGCTTAAATTTCCTGTCTTAA
Predicted protein sequences of Glyma13g37395
>Glyma13g37395.1   sequence type=predicted peptide   gene model=Glyma13g37395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQCQRFSAVLFLSLCFRIAQVYAHGDSDLDEHWYTGTATWYGDPEGNGSNGGACGYGTLVDVKPLKGRVAAVGPVLFKKGEGCGACYKVKCLDRSICSKRAVTVIITDECPGCRTDRTHFDLSGSAFGRMALSGENVKLRNRGEIPILYRRASCKYGGKNIVFHVNEGSTPFWLSLQVEFQNGDGVIGSMHIQQAGSSEWLQMKREWGANWCIIKGPLKGPFSVKLSTSTGKSLIAKDVIPSNWAPKASYTSRLNFLS*






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