SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03550 | AT | Annotation by Michelle Graham. TAIR10: glucan synthase-like 5 | chr4:1573513-1579195 FORWARD LENGTH=1780 | SoyBase | E_val: 0 | ISS |
| GO:0000003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reproduction | SoyBase | N/A | ISS |
| GO:0006075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: (1->3)-beta-D-glucan biosynthetic process | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009870 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0052544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0000148 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: 1,3-beta-D-glucan synthase complex | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003843 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1,3-beta-D-glucan synthase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG0916 | KOG | 1,3-beta-glucan synthase/callose synthase catalytic subunit | JGI | ISS | |
| PTHR12741 | Panther | UNCHARACTERIZED DUF605 | JGI | ISS | |
| PTHR12741:SF4 | Panther | gb def: Hypothetical protein F10M23.90 (AT4g26750/F10M23 90) (Hypothetical protein AT4g2 | JGI | ISS | |
| PF02364 | PFAM | 1,3-beta-glucan synthase component | JGI | ISS | |
| UniRef100_G7JSU8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Callose synthase n=1 Tax=Medicago truncatula RepID=G7JSU8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BEEF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BEEF related cluster n=1 Tax=unknown RepID=UPI000233BEEF | SoyBase | E_val: 0 | ISS |
|
Glyma13g37290 not represented in the dataset |
Glyma13g37290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g297100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g37290.2 sequence type=CDS gene model=Glyma13g37290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGATCACTAATCGCCACCACCACCACGTTCAGCCCTACAACATCATCCCCCTCCACTCCCCGCTCTCCGACCATCCATCCCTCCGCTTCCCGGAGGTCCGCGCCGCCGCCGCCGCCCTCCACTCCGTCGGGGACCTCCTCCGCCCCCCGAAATGGCAGCCAGGTATGGACCTCCTGGACTGGCTTGCCCTCTTCTTCGGGTTCCAAACCGACAACGTTCGCAACCAGCGCGAGCACCTCGTCCTCCACCTCGCCAACTCCCAGATGCGCCTCTCCCCTCCCCCCGAAACCCTCGACGCCACCGTCCTCCGCTCCTTCCGCACAAAACTCCTCCGCAACTACACCGCCTGGTGCAACCACCTCCCCACCAAACCCTCTGTCTGGCTCTCCAATAACAAAACCAACTCCTCCGATGACGACCGCCGCCGCGAACTTCTCTACGTCGCCCTCTACCTCCTCATTTGGGGCGAGGCCGCCAACCTTCGCTTCCTCCCCGAATGCATCGCTTACATCTTCCATCACATGGCCATCGACCTCAACAAAATACTACAAGACCAATATCATAACCAACCCTCATCAAACAACTTCCTAGAGCGTGTTGTGAAACCGATTTACCAAACCATACTCTCTGAAGTCGAGACTAGCAGGAACGGAACCGCGCCTCACTGTGAATGGCGAAACTACGACGACATAAACGAGTTTTTCTGGAACAAGCGGTGCTTTAAGAAGCTCAAGTGGCCTATTGATGTTGGAAGCGACTTTTTTCTTACCAAACGCGTGGGAAAGACTGGGTTTGTGGAACGGCGGTCGTTTTGGAACTTGTTTAGGAGTTTCGATAGGCTTTGGATCATGCTGGTTTTGTTCCTTCAGGTTGGTTTAATTGTTGCGTGGAAGGATAGGGCTTATCCTTGGCATGCATTGGAGGAACGTGACGTGCAGGTTCGGGTCTTAACCGTTTTCTTCACGTGGAGTGCTCTCCGGTTTCTGCAGTCTTTGCTTGACATAGTCATGCAATGCAGCAGATTGGTTTCAGTGGAGACAATTGGGCTTGGAGTGAGGATGGTGCTGAAAACCATCGTAGCCGCGGCGTGGTTCGTTGTGTTTCTTGTGTTTTATCTGAAGATATGGGAGCAGAGAAATCGTGATGGGAAGTGGTCTGTTGAAGCAAACAAGCGATTGATAACTTTTCTTGAGGTTGCTTTTGTTTTCGTGGTTCCGGAGCTTCTGGCTTTGGTCCTTTTTGTGCTTCCTTGGGTTAGGAATTTTATTGAGAACAGTGACTGGAGGGTCTGTTATATGGTGTCATGGTGGTTTCAGACAAAGACTTTCGTCGGTCGTGGATTGAGAGAAGGTCTTGTGGACAACATTAGGTACACCTTGTTCTGGGTTGTGGTCTTGGCCTCCAAATTTTGTTTCAGCTACTTTTTACAGATTAGGCCAATGGTTGCTCCATCAAAGGCAGTTTTGGACCTTAGGGATGTTAATTATCTGTGGCATGAGTTTTTTCATAATGGTAACGGGTTTGCTCTCGGGCTAATCTGGATTCCTGTTGTTTTGATTTATCTGATGGATATTCAGATATGGTATTCTATATATTCATCTTTGGTTGGGGCAGGTGTGGGGTTGTTTTCACACTTGGGTGAGATTCGGAGTATGCAGCAGTTGAAGTTGAGGTTTCAGTTTTTCGCTAGCGCGGTTCTGTTTAATCTAATGCCAGAGGAGCAGTTGTTGAATGCAAGGAAAACATTGAGTGGCAAAGTTAAGGATGGTATTCATAGGATGAAGCTAAGGTACGGGTTTGGTCAGCCATATATGAAGCTTGAGTTTAATCAAGGTGAGGCTAACAAGTTTTCATTGATATGGAATGAGATAATTATGTGCTTTAGGGAAGAAGATATCATATCTGATCGAGAGGTTGAACTATTAGAGCTGCCAAAAAACCCTTGGAATGTGAGGGTTATTCGATGGCCATGTTTTCTTCTATGTAATGAGTTGTTGCTGGCTCTAAGTCAGGCCAAAGAGCTAGTTGATGCTCCTGATAGGAGGCTATGGAGGAAGATCTGCAAGAATGAGTTTAGGCGATGTGCTGTCATTGAAACATATGACTGCATCAAGCACTTGCTTTTTCAGATTATCAAACCTGACAGTGAAGAGCATTCTATTGTGATGGTTCTGTTTCAAGAAATTGATCACTCTCTCGAGATTGGGAAGTTCACTAAAGTATTCAAAACCACTACACTTCCTCAGCTACACAACAAGTTGATAAAACTCATTGAGTTATTGAACAGAGAAAAAGTAAATTCTAAGCAATTGGTGTACACCCTTCAGGCCATTTATGAGATTGTTGTCCGAGATTTTTTCAAGGAGAAAAGGAATACTGAACAGCTTAGGGAGGACGGTTTGGCTCCACAAAATCCATCTTCTTCTGATGTTCTACTTTTCGAGAATGCGACTCAGTTGCCCGAGGCTATCAATGAGAACTTCTACAGACAGATTCGGCGCTTGCATACTATTCTTACATCTAGAGATTCAATGCAAAACATCCCAGTTAATCTAGAAGCCAGAAGAAGGATTTCTTTCTTCACCAATTCACTTTTTATGAACATGCCCCATGCCCCCCAAGTTGAGAAAATGATGGCTTTCAGTGTTCTAACCCCTTATTACAGTGAAGAAGTAGTTTACAGTAAAGAACAACTCAGAGTTGGGAATGAAGATGGGATATCAACCCTGTACTATTTGCAGACTATATATGATGATGAGTGGAAGAATTTTATGGAGAGGATGAAGAGGGAGGGGATGAACAATGAGAGGGATATATGGACTGATAAACTTAGTGATTTGAGGTCATGGGCATCCTATAGAGGCCAGACACTATCAAGGACTGTTAGAGGAATGATGTACTACTATAAGGCCCTCAAGCTTTTGGCATTTCTGGATTCTGCATCAGAAATAGAGACCCAAGAAGGCGCACGCGAACTTGTTCCACTGAATCAAGAAAACTCAAATGGTTCTAACTTGGAAAGGTCACCTTCCCCTATGACTTTAAGCAAAGCAAGCAGTTCAGCAAGTTTGTTATTCAAAGGGCATGAATATGGCACTGCTTTAATGAAATTCACGTATGTGATTGCTTGCCAGATATATGGAGCACAGAAGGAAAGAAAGGACCCCCATGCAGATGAAATTTTGTATCTAATGAAAAACAATGAAGCCCTTCGAGTTGCCTATGTTGATGAGGTTCCCACTGGTAGAGATGCGAAAGAGTATTATTCTGTTCTCGTTAAGTTTGACCAACAACTGGACAAGGAAGTGGAAATTTACCGTGTGAAGCTGCCAGGTCCAATAAAACTAGGAGAAGGAAAGCCAGAGAATCAAAACCATGCCATCATCTTCACTCGCGGCGATGCTGTTCAGACCATTGACATGAACCAGGACAACTACTTTGAGGAGGCACTTAAAATGAGGAATCTCTTGGAAGAATACAGACACAACTATGGTCTTAGGAAACCTACTATTTTGGGAGTGAGGGAAAACATTTTTACCGGTTCTGTTTCCTCCTTAGCATGGTTCATGTCGGCTCAGGAAACAAGTTTTGTCACCTTGGGACAGAGGGTTTTGGCAAACCCTCTCAAAGTTCGAATGCATTATGGCCACCCTGATGTGTTTGACAGGTTTTGGTTCATAACTAGAGGTGGCATCAGCAAAGCCTCAAGAGTGATCAACATAAGCGAGGACATCTTTGCCGGCTTTAACTGCACACTTCGTGGGGGTAATGTCACACATCATGAATACATTCAGGTTGGAAAAGGAAGGGATGTTGGATTGAACCAAATATCAATGTTTGAAGCAAAGGTTGCAAGTGGAAATGGGGAGCAAGTACTAAGCAGAGATGTGTATAGATTGGGTCATAGGCTTGATTTTTTTCGTATGTTGTCATTCTTCTACACTACAGTGGGGTTCTTTTTCAACACCATGATGGTGGTTCTTACCGTATATTCATTCTTATGGGGCAGATTGTTGCTTGCTCTTAGTGGCATTGAAGCTGCTATGGAAAGTAACAGCAACAACAACAAAGCACTTAGTATAATCTTGAATCAGCAGTTCATGGTTCAAATTGGACTTTTCACTGCCCTTCCAATGATTGTGGAGAATTCCCTTGAACAAGGGTTCCTTCAAGCCGTTTGGGATTTCTTGACAATGCAGCTCCAACTTTCATCAGTTTTCTACACATTCTCAATGGGCACACGCAGCCACTTCTTTGGAAGAACCATTTTGCATGGCGGAGCAAAATACCGAGCCACGGGGCGCGGTTTCGTTGTAGAGCACAAGAGTTTTGCAGAAAACTATAGACTCTATGCTCGCAGCCATTTTGTGAAAGCAATTGAACTGGGACTAATACTAACAGTTTATGCATCACACAGCACTGTAGCAACTGACACATTTGTTTACATAGCCATGACATTCTCTAGTTGGTTCTTGGTTGCATCATGGATCATGGCGCCGTTTGTGTTCAACCCTTCTGGCTTTGACTGGCTGAAAACTGTGTATGATTTTGAGGACTTCATGAACTGGATTTGGAACCGCCAAAGGGTGTTTGCTAAAGCTGAACAGAGCTGGGAAAAGTGGTGGTACGAAGAGCAAGATCATCTTAAGGTAACTGGCTTTTGGGGAAAGCTTTTGGAGATAATTTTAGACCTTAGGTTCTTCATATTCCAATATGGTATTGTCTATCAGCTAGGCATAGCTGCTAGAAGCACCAGCATTGTTGTTTACTTGCTATCTTGGGTTTATGTGTTTGTTGTATTTGGGATCTATGTGGTGGTAGCTTATGCTCAAAACGAATATGAAGCAAAACACCACATCTATTACCGGTTGGTCCAATCCATGCTCATAGTCATTGCCATACTTGTAATAGTTGCATTGCTGAAATTCACTGAATTCAAATTCATGGACATTTTCACTAGCTTGGTGGCATTCATTCCTACAGGATGGGGCATGATATTGATTGCTCAAGTGTTCAGGCCATGTTTGCAGTGCACCATAGTTTGGAATGTTGTTGTTTCCTTGGCTCGTTTATATGATATATTATTTGGGGTCATTGTTATGACCCCTGTGGCTCTACTATCGTGGTTGCCAGGGTTTCAGCCTATGCAAACAAGGATTCTGTTCAATGAAGCATTCAGTAGGGGACTTCGAATATTCCAGATTGTTACGGGAAAAAAGTCATTGTGA
>Glyma13g37290.2 sequence type=predicted peptide gene model=Glyma13g37290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPITNRHHHHVQPYNIIPLHSPLSDHPSLRFPEVRAAAAALHSVGDLLRPPKWQPGMDLLDWLALFFGFQTDNVRNQREHLVLHLANSQMRLSPPPETLDATVLRSFRTKLLRNYTAWCNHLPTKPSVWLSNNKTNSSDDDRRRELLYVALYLLIWGEAANLRFLPECIAYIFHHMAIDLNKILQDQYHNQPSSNNFLERVVKPIYQTILSEVETSRNGTAPHCEWRNYDDINEFFWNKRCFKKLKWPIDVGSDFFLTKRVGKTGFVERRSFWNLFRSFDRLWIMLVLFLQVGLIVAWKDRAYPWHALEERDVQVRVLTVFFTWSALRFLQSLLDIVMQCSRLVSVETIGLGVRMVLKTIVAAAWFVVFLVFYLKIWEQRNRDGKWSVEANKRLITFLEVAFVFVVPELLALVLFVLPWVRNFIENSDWRVCYMVSWWFQTKTFVGRGLREGLVDNIRYTLFWVVVLASKFCFSYFLQIRPMVAPSKAVLDLRDVNYLWHEFFHNGNGFALGLIWIPVVLIYLMDIQIWYSIYSSLVGAGVGLFSHLGEIRSMQQLKLRFQFFASAVLFNLMPEEQLLNARKTLSGKVKDGIHRMKLRYGFGQPYMKLEFNQGEANKFSLIWNEIIMCFREEDIISDREVELLELPKNPWNVRVIRWPCFLLCNELLLALSQAKELVDAPDRRLWRKICKNEFRRCAVIETYDCIKHLLFQIIKPDSEEHSIVMVLFQEIDHSLEIGKFTKVFKTTTLPQLHNKLIKLIELLNREKVNSKQLVYTLQAIYEIVVRDFFKEKRNTEQLREDGLAPQNPSSSDVLLFENATQLPEAINENFYRQIRRLHTILTSRDSMQNIPVNLEARRRISFFTNSLFMNMPHAPQVEKMMAFSVLTPYYSEEVVYSKEQLRVGNEDGISTLYYLQTIYDDEWKNFMERMKREGMNNERDIWTDKLSDLRSWASYRGQTLSRTVRGMMYYYKALKLLAFLDSASEIETQEGARELVPLNQENSNGSNLERSPSPMTLSKASSSASLLFKGHEYGTALMKFTYVIACQIYGAQKERKDPHADEILYLMKNNEALRVAYVDEVPTGRDAKEYYSVLVKFDQQLDKEVEIYRVKLPGPIKLGEGKPENQNHAIIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEYRHNYGLRKPTILGVRENIFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWFITRGGISKASRVINISEDIFAGFNCTLRGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFFRMLSFFYTTVGFFFNTMMVVLTVYSFLWGRLLLALSGIEAAMESNSNNNKALSIILNQQFMVQIGLFTALPMIVENSLEQGFLQAVWDFLTMQLQLSSVFYTFSMGTRSHFFGRTILHGGAKYRATGRGFVVEHKSFAENYRLYARSHFVKAIELGLILTVYASHSTVATDTFVYIAMTFSSWFLVASWIMAPFVFNPSGFDWLKTVYDFEDFMNWIWNRQRVFAKAEQSWEKWWYEEQDHLKVTGFWGKLLEIILDLRFFIFQYGIVYQLGIAARSTSIVVYLLSWVYVFVVFGIYVVVAYAQNEYEAKHHIYYRLVQSMLIVIAILVIVALLKFTEFKFMDIFTSLVAFIPTGWGMILIAQVFRPCLQCTIVWNVVVSLARLYDILFGVIVMTPVALLSWLPGFQPMQTRILFNEAFSRGLRIFQIVTGKKSL*
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