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Report for Sequence Feature Glyma13g37140

Feature Type:gene_model
Chromosome:Gm13
Start:38311527
stop:38314764
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28390AT Annotation by Michelle Graham. TAIR10: ADP/ATP carrier 3 | chr4:14041486-14042781 REVERSE LENGTH=379 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006839GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial transport SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0015865GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide transport SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005471GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP:ADP antiporter activity SoyBaseN/AISS
KOG0749 KOG Mitochondrial ADP/ATP carrier proteins JGI ISS
PTHR24089Panther FAMILY NOT NAMED JGI ISS
PTHR24089:SF35Panther SUBFAMILY NOT NAMED JGI ISS
PF00153PFAM Mitochondrial carrier protein JGI ISS
UniRef100_I1M3R5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3R5_SOYBN SoyBaseE_val: 0ISS
UniRef100_O49447UniRef Annotation by Michelle Graham. Most informative UniRef hit: ADP,ATP carrier protein 3, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=ADT3_ARATH SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g37140 not represented in the dataset

Glyma13g37140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g33280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g295500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g37140.1   sequence type=CDS   gene model=Glyma13g37140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGGATTGCACTCGCGGCATCCATCAGTAGTTCAGAAGTTATCTGGACAGTCTTATTTGTTGTCTAGGCTTGCCCCTACTCACTCAAGAAACTATTCCACAACTGGTAGTTACTTCAATGGAGGCTTGCAGTCTTCGGGTTTGGTTCCAGTCATGGCACATGCACCGGCTGAGAAAGGAGTGTCTGGATTTTTGTTGGATTTCATGATGGGAGGAGTGTCGGCTGCTGTGTCCAAGACGGCTGCGGCTCCAATCGAGCGAGTTAAGTTGCTCATCCAAAACCAGGATGAAATGATCAAGAGTGGTCGGTTGTCTGAACCATACAAGGGAATCGGCGATTGTTTCAGTCGAACCATGAAGGATGAAGGGGTGATTGCTCTTTGGAGAGGAAACACTGCTAATGTTATCAGATACTTCCCTACTCAGGCTCTCAACTTTGCTTTTAAGGATTATTTCAAGAGGCTTTTCAATTTCAAAAAGGATAAAGATGGGTACTGGAAATGGTTTGCTGGGAATTTAGCATCTGGTGGGGCTGCTGGGGCTTCCTCTCTGTTGTTTGTCTATTCTTTGGACTATGCCCGAACACGTTTAGCAAATGATGCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTCAATGGCTTGGTTGATGTTTACAGGAAAACTATCAAGTCTGATGGTATTGCTGGCCTTTATCGTGGTTTCAACATCTCATGTGTTGGAATCATAGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTGGTCTTGGTTGGTGGATTGCAGGATAGTTTCTTTGCTAGTTTTCTTTTGGGATGGGGGATCACAATAGGTGCCGGCTTGGCCTCTTACCCCATTGATACTGTGCGTAGAAGAATGATGATGACATCTGGAGAAGCTGTAAAATACAAGAGCTCTTTGGAAGCATTCAAGATAATCGTCGCAAAAGAGGGTACTAAGTCACTCTTTAAAGGTGCTGGTGCAAACATATTACGTGCTGTTGCAGGTGCTGGAGTGCTTGCTGGTTATGATAAGCTACAGCTCATCTTGTTCGGAAAGAAATACGGTTCTGGCGGTGGAGGTTAA

>Glyma13g37140.1   sequence type=predicted peptide   gene model=Glyma13g37140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGLHSRHPSVVQKLSGQSYLLSRLAPTHSRNYSTTGSYFNGGLQSSGLVPVMAHAPAEKGVSGFLLDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFSRTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGLQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLEAFKIIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLILFGKKYGSGGGG*







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