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Report for Sequence Feature Glyma13g37130

Feature Type:gene_model
Chromosome:Gm13
Start:38307906
stop:38309485
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g37130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53160AT Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 4 | chr1:19806478-19807080 FORWARD LENGTH=174 SoyBaseE_val: 1.00E-33ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010321GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of vegetative phase change SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03110PFAM SBP domain JGI ISS
UniRef100_I1M3R4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3R4_SOYBN SoyBaseE_val: 3.00E-111ISS
UniRef100_Q52UU1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter binding-like protein n=1 Tax=Betula platyphylla RepID=Q52UU1_BETPL SoyBaseE_val: 3.00E-59ISS

Expression Patterns of Glyma13g37130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g37130 not represented in the dataset
Glyma13g37130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g37130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g295400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g37130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g37130
>Glyma13g37130.1   sequence type=CDS   gene model=Glyma13g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGAGGAGTGACAGGTTGAAGAGGGATGTGGCAGATTGTGGTGACAACAACCAAAACGGGTACGTGGAGCAAGAGAAGAAGATAAAAGGGGTGCATATATGCGGTGTTGTCAACGCCGATCTTCATGAGGCCAAGCAGTACCACAGGAGGCACAGGGTGTGTGAGTATCATGTAAAGGCTCAGGTTGTGCTTGTTGATGAGGTTAGACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAATTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGCAGCAGTTTGGCCGGACACAATGAACGGAGGAGAAAGAACTCAGATCAGTCTCAAGCAGAAGGGTCAAGCCGCAACAAAGGGACAGGGCACCCTCAATTGAAGGACATTACTTGTGGTCAGGCTGATGAGAGGGGGAGAATTCAGATAACAATCCACGAAAATGCTGCTTACAAACATTTCCAGATAAGATGA
Predicted protein sequences of Glyma13g37130
>Glyma13g37130.1   sequence type=predicted peptide   gene model=Glyma13g37130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVRSDRLKRDVADCGDNNQNGYVEQEKKIKGVHICGVVNADLHEAKQYHRRHRVCEYHVKAQVVLVDEVRQRFCQQCSRFHELAEFDDTKRSCRSSLAGHNERRRKNSDQSQAEGSSRNKGTGHPQLKDITCGQADERGRIQITIHENAAYKHFQIR*






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