SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44240 | AT | Annotation by Michelle Graham. TAIR10: aminophospholipid ATPase 2 | chr5:17817619-17823598 FORWARD LENGTH=1107 | SoyBase | E_val: 0 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0015914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004012 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid-translocating ATPase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0206 | KOG | P-type ATPase | JGI | ISS | |
| PTHR24092 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24092:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_B9MYF4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aminophospholipid ATPase n=1 Tax=Populus trichocarpa RepID=B9MYF4_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BC40 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BC40 related cluster n=1 Tax=unknown RepID=UPI000233BC40 | SoyBase | E_val: 0 | ISS |
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Glyma13g37090 not represented in the dataset |
Glyma13g37090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g33340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g295100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g37090.1 sequence type=CDS gene model=Glyma13g37090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCGTTATGTTTACATTGATGATGATGAATCATCTCACGATATTTACTGTGATAATCGTATATCAAACAGAAAATATACTGTATTAAACTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTGCAGTTATGGCCTCTCATTACTCCGGTAAATCCTGTCAGTACATGGGGTCCTCTTATCTTTATTTTTGCTGTCTCTGCATCAAAAGAGGCATGGGATGATTACAATAGATATCTTTCAGACAATAAAGCAAATGAGAAGGAAGTCTGGGTTGTCAAGAAGGGCATCAAGAAACATATACAAGCCCAGGATATTCATGTAGGTAATATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGACAGCTGCGCTGGATGGGGAAACTGATCTAAAGACACGAGTCATACCTTCTGCTTGCGTGGGAATCGATGTTGATCTATTGCACAAAATTAAGGGTGTTATTGAGTGTCCCTATCCAGATAAAGACATCAGGAGATTTGATGCAAACATGCGGCTGTTTCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACCATTCTTCAGTCATGTTACTTGAGAAACACTGAATGGGCATGTGGAGTGGCTGTGTATACAGGCAATGAAACCAAAATGGGCATGTGTAGAGGTATACCAGAACCAAAGCTCACTGCTATGGATGCCATGATTGACAAGTTGACTGGTGCTATATTTATATTCCAAATTGTTGTTGTTCTGGTTCTTGGGATAGCGGGTAATGTTTGGAAGGATACAGAAGCTAAGAAGCTATGGTATGTTCTTTACCCTCATGAAGGTCCCTGGTATGAACTGTTGGTCATTCCTTTGCGATTTGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTTTCTCTGGATTTGGTGAAGAGCTTGTATGCAAAATTTATTGACTGGGACCATCAAATGATTGACCTAGAGACTAGTATTCCATCCCATGCAACAAATACCGCGATAAGTGAGGACCTGGGACAAGTTGAGTACATTTTGACCGACAAAACAGGCACCCTCACAGAGAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCAATTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTTAATGCTGTTTCCAGTGGTTCTTCTGATGTTGTACGATTTCTTACAGTTATGGCAATATGTAATACTGTCATACCTACACAAAGCAAAACTGGAGATATCTTGTATAAGGCGCAGTCTCAGGATGAGGATGCCCTTGTTCATGCTGCTGCTCGATTGCATATGGTTTACTTTAATAAGAGTGGAAATATTCTTGAAGTCAAGTTCAACACTTCAATACTTCAGTATGAAGTCCTGGAAACCTTAGAGTTCACCTCTGATAGGAAAAGAATGTCAGTAGTGTTAAAAGATTGCCAAAATGGAAAGATCCTTCTCTTGTCGAAAGGAGCAGATGAGGCTATTCTTCCATATGCCCATGCTGGGAAGCAGACCCGACATTTCATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACATTATGTTTGGCTTGGCGTGAGTTAAAGAGAGATGAATATCGAGAATGGTCTTTGATGTTTAAAGAGGCCAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTGGCTGAGGTCTGTCAAAGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTGCCTGAAACGATCAAAACACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACTGGAGACAAGCAGAATACTGCAATACAAATTGCTCTGTCATGTAATTTTATTTCACCAGAACCAAAGGGACAGCTTCTATTAATTGATGGCAAAACAGAGGAGGAGGTTTGTAGGAGTTTAGAGAGAGTGCTCCGTACTATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCACTTGAGATTGCACTTACCCACTATCGTAAAGCTTTCACTGAGCTGGCAGTTTTGTCAAGGACTGCTATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTACAGATCTTAAAATCATGTGATTATAGAACATTGGCTATTGGTGATGGTGGGAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGCATCAGCGGCAGGGAAGGATTGCAGGCAGCAAGAGCAGCTGATTATAGTATTGGAAAGTTTAGATTCCTGAAGAGATTAATTCTGGTCCATGGCCGCTACTCTTACAACCGTACAGCATTTCTTTCTCAATATTCATTCTATAAGTCCCTACTGATATGCTTCATCCAAATCCTTTTTTCATTTATTTCAGGTGTCTCTGGAACTAGCCTCTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTATACTAGTGTTCCTGTTCTAGTCAGTGTGCTTGACAAAGATCTTAGTGAGAAAACTGTGATGCAGCATCCTCAAATTTTATTTTATTGCCAAGCAGGAAGGCTTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGGTGTATATGGATACAGGCTTTTGTAGTAACAATGGAGACCAATTCCTTTACTATATTGCAATATATGGCTATATGGGGTAATTTGGCTGCCTTTTATGTCATCAACTGGATCTTCAGTGCGCTTCCTTCATCGGGGATGTATACAATTATGTTTCGGTTGTGTCGACAACCGTCATATTGGATAGCAATTTTTCTCATGGTTGCGGCGGGGATGGGTCCAATTCTAGCCATCAAGTACTTCCGATATACATATAGACCGAGCAAAATCAATGCACTTCAACAAGCTGAACGTCTGGGTGGGCCTATTTTGTCTCTTGGCACCATTGAGCCTCAGCTGAGATCTGTAGAGAAAGATGTTTCTACCCTGTCAATAACACAACCCAAAACCAGAAATCCTGTGTATGAACCTCTGTTATCAGATTCTCCAAATGCCACCAGAAGATCTTTTGGAGCAGGAACACCATTTGATTTTTTCCAGTCACAATCAAGATTATCACTGTCTAGCTACACTCGAAATTGCAAGGACAACTGA
>Glyma13g37090.1 sequence type=predicted peptide gene model=Glyma13g37090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRYVYIDDDESSHDIYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPVSTWGPLIFIFAVSASKEAWDDYNRYLSDNKANEKEVWVVKKGIKKHIQAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYIETAALDGETDLKTRVIPSACVGIDVDLLHKIKGVIECPYPDKDIRRFDANMRLFPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGNETKMGMCRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVLVLGIAGNVWKDTEAKKLWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDLETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGNFYGNENGDALKDVELLNAVSSGSSDVVRFLTVMAICNTVIPTQSKTGDILYKAQSQDEDALVHAAARLHMVYFNKSGNILEVKFNTSILQYEVLETLEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYAHAGKQTRHFIEAVEQYAHLGLRTLCLAWRELKRDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIKTLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEEEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALTHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQILFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEKTVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYDKSEMEEVSMVALSGCIWIQAFVVTMETNSFTILQYMAIWGNLAAFYVINWIFSALPSSGMYTIMFRLCRQPSYWIAIFLMVAAGMGPILAIKYFRYTYRPSKINALQQAERLGGPILSLGTIEPQLRSVEKDVSTLSITQPKTRNPVYEPLLSDSPNATRRSFGAGTPFDFFQSQSRLSLSSYTRNCKDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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