SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G36160 | AT | Annotation by Michelle Graham. TAIR10: Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420 | SoyBase | E_val: 5.00E-122 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006559 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process | SoyBase | N/A | ISS |
| GO:0006572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tyrosine catabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0042218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004838 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-tyrosine:2-oxoglutarate aminotransferase activity | SoyBase | N/A | ISS |
| GO:0008483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transaminase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016847 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG0259 | KOG | Tyrosine aminotransferase | JGI | ISS | |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | ISS | |
| PTHR11751:SF28 | Panther | VALINE-PYRUVATE TRANSAMINASE-RELATED | JGI | ISS | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | ISS | |
| UniRef100_B9MYE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aminotransferase family protein n=1 Tax=Populus trichocarpa RepID=B9MYE9_POPTR | SoyBase | E_val: 2.00E-143 | ISS |
| UniRef100_UPI000233BD77 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BD77 related cluster n=1 Tax=unknown RepID=UPI000233BD77 | SoyBase | E_val: 0 | ISS |
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Glyma13g37071 not represented in the dataset |
Glyma13g37071 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g294900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g37071.1 sequence type=CDS gene model=Glyma13g37071 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAATGGAAGTGAGAAGTGGAATTTTCAGGGGAACAAGAAGCTAAATGCTTCATCCATTTCTGTGAGAGGGGCATATAACATGTTGATGGAGAGAGTCAACAATAGCCGAGACAAGAAACCTTTGATGGATTTCATATTTGTAATTTCTCTTCAAAGAAAGAGTCCATGGGTGACATTCAATGTTCTTTTATTTCAGTTCGCTAAGTATTTGGCACTCCATCAAATGAATATGCATGTGGCTATTGCAAATTATCTCTCTTCTGATCTTCCATACCAGTTATCACCAGAGAATGTTTTTCTCACCATTGGTGGCACACAAGCTATAGATATAATCTTACCTGTCCTTGCACGTCCTGGTGCCAACATTCTCCTTCCAAGACCCGGGTACCCGCAATATGATTCTCGTGCTAGTTGTTGTTGGGAGGTTGACCTTGATTCCCTTGAAGTTCTAGCAGATGAAAACTCAGTGGCCACTGTCCTCATCAATTCTAGCAATCCATGTGGAAGTGTGTTCACATACCAACATTTAGAAAGGGAACACACACATAGTCTTGTTGCTGAAATTTCTAGGAAACTTGGAATCTTTGTAATTTCTGATGAAATCTATGCCCCTGTAACTTATGGAAACAATCCATTTGTTCCCATGGGGGTGTTTTCTTCAATAGTCCCGGTCATTACAATTGGATCTTTATCAAAGAGATGGTTAGTTCCTGGTTGGAGAACTGGCTGGATAGCCACATGTGACCCTCATGGAATTTTTCAGAAAACTGGGGTTGTGAAAAAAATCATCAGTTATTTGGAGATCACAATTGACCCTCCAACCTTCTTGCAGGCAGCAATACCTGAAATCCTTGGCAAAACAAAAGATGAGTTCCTTTCAAAGAATCTTAATATATTGAGGGGGGCTGCAAACATATTCTATGATTTATGTAAGGAGATCCTTTGCTTAACATGCCCTCACAAACCAGTAGGAGCAATGTGTGTCATGGTAGAGATTAACTTTTCACAAATTAAGGACATTGTTGATGAGATGGATTTCTGTGCCAAGCTAGCTGAAGAGGAATCTGTCCTTCTTCCAGGTGTCACGGTTGGACTGAAAAATTGGCTTCGAATTAGTTTTGCTGTCCACACTTCTAATCTTGTAGAAGGCCTTAACAGGATAAAAGCATTTTGCCTTATATATGCAAAGATGCCACGAAGTTATGTCTCATGGTAG
>Glyma13g37071.1 sequence type=predicted peptide gene model=Glyma13g37071 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENGSEKWNFQGNKKLNASSISVRGAYNMLMERVNNSRDKKPLMDFIFVISLQRKSPWVTFNVLLFQFAKYLALHQMNMHVAIANYLSSDLPYQLSPENVFLTIGGTQAIDIILPVLARPGANILLPRPGYPQYDSRASCCWEVDLDSLEVLADENSVATVLINSSNPCGSVFTYQHLEREHTHSLVAEISRKLGIFVISDEIYAPVTYGNNPFVPMGVFSSIVPVITIGSLSKRWLVPGWRTGWIATCDPHGIFQKTGVVKKIISYLEITIDPPTFLQAAIPEILGKTKDEFLSKNLNILRGAANIFYDLCKEILCLTCPHKPVGAMCVMVEINFSQIKDIVDEMDFCAKLAEEESVLLPGVTVGLKNWLRISFAVHTSNLVEGLNRIKAFCLIYAKMPRSYVSW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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