SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20520 | AT | Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan 6 | chr2:8840663-8841406 FORWARD LENGTH=247 | SoyBase | E_val: 5.00E-74 | ISS |
| GO:0010054 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichoblast differentiation | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| PTHR10900 | Panther | TRANSFORMING GROWTH FACTOR | JGI | ISS | |
| PTHR10900:SF23 | Panther | FLA (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN) | JGI | ISS | |
| PF02469 | PFAM | Fasciclin domain | JGI | ISS | |
| UniRef100_A9XTK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein 4 n=1 Tax=Gossypium hirsutum RepID=A9XTK9_GOSHI | SoyBase | E_val: 1.00E-71 | ISS |
| UniRef100_C6T5L7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T5L7_SOYBN | SoyBase | E_val: 9.00E-179 | ISS |
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Glyma13g36930 not represented in the dataset |
Glyma13g36930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g33530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g293500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g36930.1 sequence type=CDS gene model=Glyma13g36930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCAAATCCTTCACCCTCATTCTCCTCATCCTCACCACATTCCTCATGGCCCAAACCCAAGCCCAAGCTCCCGCACCGGCCCCCTCAGGCGCGGTGAACCTCACCGCGATCCTGGAAAAGGGTGGCCAGTACACCACCCTAATCAAACTCCTAAAGGACACACAACAACTCACTCAGATCGAGTCCCAGCTCAAATCAAACTCACAAGGCTTCACTCTCTTCGCACCCACTGACAATGCCTTCCAGAGCCTCAAACCCGGTGCCCTAAACGACCTGAGCGATGACAAGAAGGTGAAGCTCATTCTCTTCCACGTCACGCCCAAGTACTACACCATCTCCGATCTGTTAACTGTTAGCAACCCCGTGAGGACGCAGGCCACCGAGGAGGAAGGGACTTGGGGGCTGAACTTTACCGGCCAAGGCGGTAACCAGGTGAACATCTCCACGGGCGTGGTGCAGACGCAGCTCAACAACGCGCTGAGGGAGAAGTTTCCTCTGGCGGTGTACCAGGTGGACAAGGTGCTGTTGCCGTTGGAGCTCTTTGGAACCACCAAGACCACTCATTCTTCTGAGGCTCCTTCTCCTAAGGGTTCTAAGAGTACTCCTGAGATTCCCAGCGTGGGTAAGGCTGGTGGCGCTCCTTCTCCTCATGGTGATAAGAAGGATACTAATGCTGCCAATGGGAGGAATGTGGCTTTTGGACTTGTCGTTGGACTTGCCTTGATTTGCATAGAAGCTCTCCATTGA
>Glyma13g36930.1 sequence type=predicted peptide gene model=Glyma13g36930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASKSFTLILLILTTFLMAQTQAQAPAPAPSGAVNLTAILEKGGQYTTLIKLLKDTQQLTQIESQLKSNSQGFTLFAPTDNAFQSLKPGALNDLSDDKKVKLILFHVTPKYYTISDLLTVSNPVRTQATEEEGTWGLNFTGQGGNQVNISTGVVQTQLNNALREKFPLAVYQVDKVLLPLELFGTTKTTHSSEAPSPKGSKSTPEIPSVGKAGGAPSPHGDKKDTNAANGRNVAFGLVVGLALICIEALH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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