SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g36900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g36900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma13g36900

Feature Type:gene_model
Chromosome:Gm13
Start:38120077
stop:38122588
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75840AT Annotation by Michelle Graham. TAIR10: RAC-like GTP binding protein 5 | chr1:28475964-28477377 FORWARD LENGTH=196 SoyBaseE_val: 1.00E-116ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009524GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
KOG0393 KOG Ras-related small GTPase, Rho type JGI ISS
PTHR24072Panther FAMILY NOT NAMED JGI ISS
PTHR24072:SF353Panther JGI ISS
PF00071PFAM Ras family JGI ISS
UniRef100_Q40220UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rac-like GTP-binding protein RAC2 n=1 Tax=Lotus japonicus RepID=RAC2_LOTJA SoyBaseE_val: 3.00E-125ISS
UniRef100_UPI00019A9E8AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00019A9E8A related cluster n=1 Tax=unknown RepID=UPI00019A9E8A SoyBaseE_val: 3.00E-133ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g36900 not represented in the dataset

Glyma13g36900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g293100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g36900.2   sequence type=transcript   gene model=Glyma13g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACTTAACCAACTAACACCACTACAGCACCAAACGACTCCTTTGTTGCTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCAATAATGTTCAAGGTAAAAGAGGCACACTAAAGTTGGTGCTGAGGGACTTGGCTTATTAAATGCTGATCATCCCCTCCATTTCTTTTCAAAATCAAATTGACCCTTCTGGCCTTCTCTTCCTCCTTCTTTCTAAGCATCATACTTCTTCTCTCCATTGTTTCATTTTTATTTCCAATTCTTCAAGTGAAAGGAATATAGGAACTTGAAGTGATGAAAACAACAGAATGTTAAAGGAAGCTTTGATGTGAGGTGAGGTGAGGAAATCACAAGAGGAATTTGAAAATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTGGGAGATGGAGCCGTGGGAAAGACATGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGACTATGTGCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGATTGATGGAAGCACAGTTAATCTAGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTGGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGGCCCATTTTGTGCAGTGGATCCCTGAACTGAGACATTATGCCCCAATTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAATATTTGATTGATCATCCTGCGGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGAAATTGGTGCTGCTGTGTATATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGACGCTGCAATCAAGGTTGTTCTGCAGCCATCAAAGCCAAAGAAAAAACGAAAGAAGAACAGAACATGCGTTTTCCTTTAATTGGTATTCATTTGATTTGCATCATGTAACATTCGTACCCTTCCCCTAAGTTTTCCTTCTGTTTTTTTTTACTTTATTTGATTGCAAGAATCGCCCTTTCTGAACGTATGTATTCCAAACTCTACCCTCTTTCGGTTTTCCAATACTTTTTATTGCTGGTGGATCTAAATGATGTTGTATCTACTGGATAAATACAAGGAAAGAATGTACTCAATTAAAGATAATTTTTGTGATAAGAAAAGTATAATAGCATTAATCATCACTTTTGTGTTGCTCAGCA

>Glyma13g36900.1   sequence type=CDS   gene model=Glyma13g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTGGGAGATGGAGCCGTGGGAAAGACATGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGACTATGTGCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGATTGATGGAAGCACAGTTAATCTAGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTGGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATCCCTGAACTGAGACATTATGCCCCAATTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAATATTTGATTGATCATCCTGCGGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGAAATTGGTGCTGCTGTGTATATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGACGCTGCAATCAAGGTTGTTCTGCAGCCATCAAAGCCAAAGAAAAAACGAAAGAAGAACAGAACATGCGTTTTCCTTTAA

>Glyma13g36900.2   sequence type=CDS   gene model=Glyma13g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTGGGAGATGGAGCCGTGGGAAAGACATGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGACTATGTGCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGATTGATGGAAGCACAGTTAATCTAGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTGGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGGCCCATTTTGTGCAGTGGATCCCTGAACTGAGACATTATGCCCCAATTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAATATTTGATTGATCATCCTGCGGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGAAATTGGTGCTGCTGTGTATATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGACGCTGCAATCAAGGTTGTTCTGCAGCCATCAAAGCCAAAGAAAAAACGAAAGAAGAACAGAACATGCGTTTTCCTTTAA

>Glyma13g36900.1   sequence type=predicted peptide   gene model=Glyma13g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVIDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPIVPIVLVGTKLDLREDRQYLIDHPAATPITTAQGEELKKEIGAAVYIECSSKTQQNVKAVFDAAIKVVLQPSKPKKKRKKNRTCVFL*

>Glyma13g36900.2   sequence type=predicted peptide   gene model=Glyma13g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVIDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKAHFVQWIPELRHYAPIVPIVLVGTKLDLREDRQYLIDHPAATPITTAQGEELKKEIGAAVYIECSSKTQQNVKAVFDAAIKVVLQPSKPKKKRKKNRTCVFL*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo