SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42360 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:17640907-17641617 FORWARD LENGTH=236 | SoyBase | E_val: 1.00E-52 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR14155 | Panther | RING FINGER PROTEIN 6/12/38 | JGI | ISS | |
| PTHR14155:SF2 | Panther | RING-FINGER PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7ZVJ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger family protein n=1 Tax=Medicago truncatula RepID=G7ZVJ1_MEDTR | SoyBase | E_val: 4.00E-64 | ISS |
| UniRef100_I1M3N5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M3N5_SOYBN | SoyBase | E_val: 5.00E-156 | ISS |
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Glyma13g36850 not represented in the dataset |
Glyma13g36850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g33620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g292600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g36850.3 sequence type=transcript gene model=Glyma13g36850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTCTTGTTAGTTAAGACCAATGACTTTTATAGCCACAATGGAAGAAGAAAATATCCATTAGAAAAAGACCGTAGACTTTGGCCATTTTTTCACTCCACACGGAGCCAAAGCCAAATCCAAAGCCAACAACAACGCCACCAACTCAACAACAGGAAAGTCCTCATAAACCCCATAACCCAAACCAAAACCCATTGTCTCCTTCTCCTCCTTCTTTCTCCCTCTCTCTCATACACAAAGAGGCCATGGGTTACTTGGACGATGATCATGATCATGACACATTCCACGACCACAACGACTTCAACAGAAGGATACTCATCATGGCTATAGTTTCCTTATCAGTGGTATTGGTTCTTGTCTTTACACTTCACCTCTACGCAAGGTTTTTCCTCCGCCGCAGAGCCGCCATATACCAACTCAGCCTCAACGTGGCACACGCACACGCCGAGCCAGACAACAACACAGGGCTCGACCCTGTCCTCATCACCACCCTCCCCACCTTCCCCTTCAAACAACCAAACAACGATTCTGTGGAGTGTACCGTGTGCTTGAGCGTTCTAGAAGATGGAGAACAAGTGAGGCTTCTTCCCAATTGCAAACACAGCTTCCACGTCGGTTGCATCGACACGTGGCTTGCTTCGCACTCCACGTGTCCCATTTGCCGGACCAAGGCCGAACCGGTCCGGCTCGAACCGCAGCCGCGTGAGGGCCCCACCGGCTCGGTTCTTCTCGATGTTGTTGCACCCACGGCTCCGCTATTGTTTGAAAACGTGGAAGGAACCTTGGATGGTGCTAATAATAATGGGTCACCTAAGGTTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCAGAAGGATTCTTAGTAGGGACAGATCGATGAGGAGGATTCAACCTTCTAGCCATGATGATGTTGAACATGATTTAGAGAGGCAGTGACAAATTAATTAATTATTGAGATTGATACACACGGAAAGAGCTTGGGAAAAAAAAATTGTCAAGGTGACATATAACACGGTTTTGAATTGTTATTTTATACATGTTAGTCAAATATGAGTGATTATTTTGTATTGAATTTGATTTGATTGCTCGTATATTGCTGTGATTATATATATATATATATACATATATTGTAAAAAGGATTTGGTGTTTGGTAACCTAAATTAACATAACAATGACGGTGGAGATATAATATTGTAGATTAGGGGGTAGACCATGTGAGCTTAGTAAAGATTAATTAACGGATTATTTGTAGATTAGTGCGTGTGTCTTTTAAATTTCGTAGTTGGTTTTGTTCTATTGCGGCCTTATTACCATATAGTGAATGAGCTTCGGTGGGAAGTCAAAAATCAGGAGCCTCATATTTGGGATTCTTGTTGACTTGCTCCTATAAATATAATGTATAAACAAGAAGGTGCCAAACCCCAGATTGACGATCTAACTTTCAGTTTCACACAGAATAAAATGGATTTGAGTCTCTTGCTGTCA
>Glyma13g36850.2 sequence type=CDS gene model=Glyma13g36850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTACTTGGACGATGATCATGATCATGACACATTCCACGACCACAACGACTTCAACAGAAGGATACTCATCATGGCTATAGTTTCCTTATCAGTGGTATTGGTTCTTGTCTTTACACTTCACCTCTACGCAAGGTTTTTCCTCCGCCGCAGAGCCGCCATATACCAACTCAGCCTCAACGTGGCACACGCACACGCCGAGCCAGACAACAACACAGGGCTCGACCCTGTCCTCATCACCACCCTCCCCACCTTCCCCTTCAAACAACCAAACAACGATTCTGTGGAGTGTACCGTGTGCTTGAGCGTTCTAGAAGATGGAGAACAAGTGAGGCTTCTTCCCAATTGCAAACACAGCTTCCACGTCGGTTGCATCGACACGTGGCTTGCTTCGCACTCCACGTGTCCCATTTGCCGGACCAAGGCCGAACCGGTCCGGCTCGAACCGCAGCCGCGTGAGGGCCCCACCGGCTCGGTTCTTCTCGATGTTGTTGCACCCACGGCTCCGCTATTGTTTGAAAACGTGGAAGGAACCTTGGATGGTGCTAATAATAATGGGTCACCTAAGGTTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCAGAAGGATTCTTAGTAGGGACAGATCGATGAGGAGGATTCAACCTTCTAGCCATGATGATGTTGAACATGATTTAGAGAGGCAGTGA >Glyma13g36850.3 sequence type=CDS gene model=Glyma13g36850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTACTTGGACGATGATCATGATCATGACACATTCCACGACCACAACGACTTCAACAGAAGGATACTCATCATGGCTATAGTTTCCTTATCAGTGGTATTGGTTCTTGTCTTTACACTTCACCTCTACGCAAGGTTTTTCCTCCGCCGCAGAGCCGCCATATACCAACTCAGCCTCAACGTGGCACACGCACACGCCGAGCCAGACAACAACACAGGGCTCGACCCTGTCCTCATCACCACCCTCCCCACCTTCCCCTTCAAACAACCAAACAACGATTCTGTGGAGTGTACCGTGTGCTTGAGCGTTCTAGAAGATGGAGAACAAGTGAGGCTTCTTCCCAATTGCAAACACAGCTTCCACGTCGGTTGCATCGACACGTGGCTTGCTTCGCACTCCACGTGTCCCATTTGCCGGACCAAGGCCGAACCGGTCCGGCTCGAACCGCAGCCGCGTGAGGGCCCCACCGGCTCGGTTCTTCTCGATGTTGTTGCACCCACGGCTCCGCTATTGTTTGAAAACGTGGAAGGAACCTTGGATGGTGCTAATAATAATGGGTCACCTAAGGTTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCAGAAGGATTCTTAGTAGGGACAGATCGATGAGGAGGATTCAACCTTCTAGCCATGATGATGTTGAACATGATTTAGAGAGGCAGTGA
>Glyma13g36850.2 sequence type=predicted peptide gene model=Glyma13g36850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYLDDDHDHDTFHDHNDFNRRILIMAIVSLSVVLVLVFTLHLYARFFLRRRAAIYQLSLNVAHAHAEPDNNTGLDPVLITTLPTFPFKQPNNDSVECTVCLSVLEDGEQVRLLPNCKHSFHVGCIDTWLASHSTCPICRTKAEPVRLEPQPREGPTGSVLLDVVAPTAPLLFENVEGTLDGANNNGSPKVSGSNSRLSSFRRILSRDRSMRRIQPSSHDDVEHDLERQ* >Glyma13g36850.3 sequence type=predicted peptide gene model=Glyma13g36850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYLDDDHDHDTFHDHNDFNRRILIMAIVSLSVVLVLVFTLHLYARFFLRRRAAIYQLSLNVAHAHAEPDNNTGLDPVLITTLPTFPFKQPNNDSVECTVCLSVLEDGEQVRLLPNCKHSFHVGCIDTWLASHSTCPICRTKAEPVRLEPQPREGPTGSVLLDVVAPTAPLLFENVEGTLDGANNNGSPKVSGSNSRLSSFRRILSRDRSMRRIQPSSHDDVEHDLERQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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