Glyma13g36840 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g36840

Feature Type:	gene_model
Chromosome:	Gm13
Start:	38068945
stop:	38072356
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g36840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15030	AT	Annotation by Michelle Graham. TAIR10: TCP family transcription factor 4 \| chr3:5062308-5063570 FORWARD LENGTH=420	SoyBase	E_val: 7.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006417	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translation	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045962	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_G7ZVJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor PCF5 n=2 Tax=Medicago truncatula RepID=G7ZVJ2_MEDTR	SoyBase	E_val: 8.00E-151	ISS
UniRef100_I1M3N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3N4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g36840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g36840

Paralog	Evidence	Comments
Glyma12g33640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g36840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g292500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g36840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g36840

Limit To All Plant Sequences

>Glyma13g36840.3   sequence type=transcript   gene model=Glyma13g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGAAATCAAACATTTTCTTAATAGTGAAGCTGCAAAGTACAGATAGGAAAGAAACCAAAAAAGCTGTTAGATGTCATTATCAAAGGCTTAAAAAGGTGTGGGTAGAAGAGATGGCCATTGAGAGTTACCTCTCTATCATCCATGACCTTAATCATAGATCATCACTAGCATCCATCTAAAGTTATTAAACAAAGTTTCAAGATGAGGAGAAAGTTGAGGGGCTGGTTAAACTCCAAGAGATGAGTTGGGGTTTGTGACAAGGCCTTATTATTATAAATTTTGCGTTTGTGGGGCTAAAAGATCTTTAATCTCTTCTCTGAGCACACTCTGCCTCTCTTTGCAGAAGCATCAACAAGCTCTCATAGGCCACAGGATTTGGTTTTTTGGGATCAGCAGCAGTGGCAGAAGCAGAAGCCTCAACAAGTAACCACAGTTGATAGTGTCAGGAACTAAGCAAAACCAAAGAGTACTACCAACTACCATACCAAAGTACCAATCTCAACAAAAACTACAAGAAACAACCCTTTAGAAGAGTAAAAGAAAAAAAGGAATCTGAATCTCACCCTATAGACACAAGAATAAAAAAAAGGAGAACAATTTTTTAGCATATAGAGTGGGGGTGTCAATTGTCATCACTCATCACACAAGGTGTGCAAACAGCGAAGGGGACTAAATTAACTATGCAGAAGGCACAATAGAAGAAACTGAGGAATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGACCACAAACTTGAACTGCACAATACTGCACTGTTCCTTATCTATCAGGACAGGAGCATTGCCTACCAGACTTTAAAACGTGGGAAGATTAAGATGGACACATTTTGATGATCTACACAATTTTATCTGGTTGGATTCAGCTTTTATATGGCTTTCTTTCCCCCCTACTTATTGCAGCCATTTACATTGGGGCTTTATATATTTTTTAAGGAAAAGAGATATTTATGTATTATGCATTATATTTACCTGATACTTTGCTCATTTTATATATGGCTTTAAGCTGGATTATTCCGTGGTTGTATCCCGTATCGTTTCTTTAATGTCGAGAATAGCATAGTTCATCCAATATCAAGTGAACAGAAGAGGTTTCATGTCAATTCTTGGTGAACCCCACTTCAAGAAAAAATTGAATCTAGTATGGTTTTGATTTAGTTATTCTCCCCTGTAGTAGAAAGACATTTTGGTTTTGTATTTCTGCATCTGCTTCAATTTCAAGTAACACCATCAGGAAGGAACTACAGATGGCTTGTAATGTCTCAAATAATAGGCAAAGTTGTAAAATGTGATCGTGGTTGAGGTTTTGCAATGTTTGATATCTTAGAAAATTGCAGACAAATAAGACTAATACATTGTAAATAAGACTATAAATTGTAAATGTAGTCATGTAGTTGCAAAAAGTCCAAAAACCTTGATGTTAATGTTATAGCCACAATTATAAATGCGGGTACAATTGCTAGTACAATACATTGCAATTGTGGGCTATTTTTCCTAACCTTGGTAATATGGCAAGTTA

Coding sequences of Glyma13g36840

Limit To All Plant Sequences

>Glyma13g36840.2   sequence type=CDS   gene model=Glyma13g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGA

>Glyma13g36840.3   sequence type=CDS   gene model=Glyma13g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGA

Predicted protein sequences of Glyma13g36840

Limit To All Plant Sequences

>Glyma13g36840.2   sequence type=predicted peptide   gene model=Glyma13g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRIVTWNSDASTDMNRTGFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQQASIFGSRFLSDALPGFCIPARIQGEDEGHGVGNDRPSSASPNSHH*

>Glyma13g36840.3   sequence type=predicted peptide   gene model=Glyma13g36840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRIVTWNSDASTDMNRTGFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQQASIFGSRFLSDALPGFCIPARIQGEDEGHGVGNDRPSSASPNSHH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain