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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42580 | AT | Annotation by Michelle Graham. TAIR10: tetratricopetide-repeat thioredoxin-like 3 | chr2:17728855-17731461 FORWARD LENGTH=691 | SoyBase | E_val: 0 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0030243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0550 | KOG | Molecular chaperone (DnaJ superfamily) | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_I1M3M3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M3M3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SIN1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inactive TPR repeat-containing thioredoxin TTL3 n=1 Tax=Arabidopsis thaliana RepID=TTL3_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma13g36720 not represented in the dataset |
Glyma13g36720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g33770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g291200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g36720.2 sequence type=transcript gene model=Glyma13g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAATTTTCGCGAGGTAAACGCAGGTTTACTCAGCTAGTAAAGTAAAGTAAAGTAATGTCACACATTACATCAGCATCATCATATTTAAGAGAAAGGATAGAAAGAGAGAGAAAACTCCAATCACTCTCTCTTTACTATTTACAGTATCACAAAATTCACTTTCTCACTTACAAAACACCCATCACTCCCTCAAACAAAGCCTCTCTTCTCTCCCAATCAGATTCGATTCTTCTCACGTAGTAACGACCAGCATTCTCTCTTCATCGTTTTCCAACCTCCTATAATATAACCATCAACAAAACAAAATAAACAACCTTAAAAAGCACGAACAAACATAAACACATAACAATGTCCAACACTCTGCAGCAACAGAGTCCCGAATCGAAACGACTCGATCTGGGTTCCAACGCTCGCCGGCCATGCCACCGGAGATCGGTCTCCGCCGGAGCTCCGTTAATTTATTCCGGCGGAGCAACCTTGCTCCCGAGCGGGAACATTTGCCCGTCGGGAAAGATCCTCAAACCCGGTTTACCCTCTCGCGGGCCGAACCGGACCGACGTGTTGGGCTCGGGCACCGTGAACTACGGCCGGGGCAGCATAGTGCGCGGTGGCTCGGGCAATATTCCGGTGCCCGCGGCCGCACCGCCGCTTACGGTGAAGCGCGCGATGAGCGGCTCCGATCCCGAGGAAGTGAAGAGGGCTGGGAATGAATTGTACAGAGGCGGGAACTTTGTAGAGGCGCTGGCAATGTACGATCGCGCCGTCGCCATCTCGCCGGGAAACGCCGCATGCCGGAGCAACCGCGCGGCGGCGCTCACGGCGCTGGGGAGGCTCGCCGAGGCCGCGAGGGAGTGCCTCGAGGCGGTAAAGTTGAACCCTGCTTATGCCAGGGCGCACAAGAGACTTGCTTCTCTTTATCTAAGATTTGGGCAGGTTGAGAATTCGCGGCGGCACTTGTGTCTCTCTGGGAATCAAGAGGATCAGTCTGAGGAGCAGAAGCTGGTGTTGTTGGAGAAGCATTTGAATCGATGCGCCGATGCGCGAAAATTCGGTGATTGGAAGAGGGTGCTTAGGGAATCAGAAGCAGCCATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTTGCTTGCAAGGTGGAAGCCTATTTAAAACTGCATCAACTTGAAGATGCTGATTCCAGTCTCTTGAATGTTCCGAAGTTGGAAGGTTGTCCTCCAGCGTGTTCTCAGACCAAGTTCTTTGGTATGGTTGGCGAAGCCTATGTTCCTTTCGTGTGTGCACAGGTTGAGATGGCGTTGGGAAGGTTTGAGAATGCTGTTGCGGCTGCAGAAAAGGCTAGCATGTTAGATTACGGTAATGTTGAAGTTGGTAGGATTGTAAATGTCGTGAAAATGGTGGCAAGAGCTCGTTCGAGGGGCAATGAACTTTTCAGCTCTGGCATGTTCTCTGAAGCTTGTTCTGCTTATGGGGAGGGCCTCAAGTATGACAACTCCAACCATGTTCTATATTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCGGTTCAAGACTGCAGCCAAGCTCTTAACATTCAACCAAATTACACCAAGGCCCTTTTCCGCAGGGCTGCATCAAACACAAAGATGCATGATCTTGTTGCAGCTTGAAAGATGGTCCGAAGTTGTTAAAGATTACCAGGCCTTAAAACGTGAACTCCCTAACGACAATGAAGTTGCCGAGTCTCTTCGTCAGGCTCAACTAGCATTAGAAAAATCTCGACAAATGGTGTATGGTACTAGGTTTGGAGTTGAAGTTGAACAAATCTGTTCATTAGACAAATTTAAAGCTGCATTAGCCTCTGCAGGTATATCGGTAGTATACTTCAAAGAGGCATCAAATGAACTATGTGAGGAATTATCTCCATTCATAAATACATTGTGTGTTAGATATCCCTCAGTTAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGCAGAAAGCATAAGAAGTGTTCCAACCTTCAAAATTTATAAAAATGGAGAGAAGGTAAAGGACATGATCCGGCCAACACATCAGTTATTAGAGGACTCAGTAAGAAAAAGTAGTAGTCTCTAGATACAAGAATTCATACACATTATTTGCATTCACATGCATGCAACTAAAAACCACAGCAATATTGAAGAAGGTGCTCCAAGGATGCACCAAGCCCTGTTCAGTTCAAATTAGGAATTTCAGCTTTCCCTGTGATACACACATGGATACCAATTTTTCGCCAGCAGCAAAACCTGAGATAGATTTTAGATAGCATTTTTGAAATCATATATGTATATCTTTTGCCCGGCATCTAATGTGCTTCCTATTTCCTTCTTTATATCAAGCCCAAAAGTGTTGTACTTCTTCCCTCCATATTGTATTAGATTTAGATAACCTCAAACAGAAAAA
>Glyma13g36720.1 sequence type=CDS gene model=Glyma13g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAACACTCTGCAGCAACAGAGTCCCGAATCGAAACGACTCGATCTGGGTTCCAACGCTCGCCGGCCATGCCACCGGAGATCGGTCTCCGCCGGAGCTCCGTTAATTTATTCCGGCGGAGCAACCTTGCTCCCGAGCGGGAACATTTGCCCGTCGGGAAAGATCCTCAAACCCGGTTTACCCTCTCGCGGGCCGAACCGGACCGACGTGTTGGGCTCGGGCACCGTGAACTACGGCCGGGGCAGCATAGTGCGCGGTGGCTCGGGCAATATTCCGGTGCCCGCGGCCGCACCGCCGCTTACGGTGAAGCGCGCGATGAGCGGCTCCGATCCCGAGGAAGTGAAGAGGGCTGGGAATGAATTGTACAGAGGCGGGAACTTTGTAGAGGCGCTGGCAATGTACGATCGCGCCGTCGCCATCTCGCCGGGAAACGCCGCATGCCGGAGCAACCGCGCGGCGGCGCTCACGGCGCTGGGGAGGCTCGCCGAGGCCGCGAGGGAGTGCCTCGAGGCGGTAAAGTTGAACCCTGCTTATGCCAGGGCGCACAAGAGACTTGCTTCTCTTTATCTAAGATTTGGGCAGGTTGAGAATTCGCGGCGGCACTTGTGTCTCTCTGGGAATCAAGAGGATCAGTCTGAGGAGCAGAAGCTGGTGTTGTTGGAGAAGCATTTGAATCGATGCGCCGATGCGCGAAAATTCGGTGATTGGAAGAGGGTGCTTAGGGAATCAGAAGCAGCCATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTTGCTTGCAAGGTGGAAGCCTATTTAAAACTGCATCAACTTGAAGATGCTGATTCCAGTCTCTTGAATGTTCCGAAGTTGGAAGGTTGTCCTCCAGCGTGTTCTCAGACCAAGTTCTTTGGTATGGTTGGCGAAGCCTATGTTCCTTTCGTGTGTGCACAGGTTGAGATGGCGTTGGGAAGGTTTGAGAATGCTGTTGCGGCTGCAGAAAAGGCTAGCATGTTAGATTACGGTAATGTTGAAGTTGGTAGGATTGTAAATGTCGTGAAAATGGTGGCAAGAGCTCGTTCGAGGGGCAATGAACTTTTCAGCTCTGGCATGTTCTCTGAAGCTTGTTCTGCTTATGGGGAGGGCCTCAAGTATGACAACTCCAACCATGTTCTATATTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCGGTTCAAGACTGCAGCCAAGCTCTTAACATTCAACCAAATTACACCAAGGCCCTTTTCCGCAGGGCTGCATCAAACACAAAGCTTGAAAGATGGTCCGAAGTTGTTAAAGATTACCAGGCCTTAAAACGTGAACTCCCTAACGACAATGAAGTTGCCGAGTCTCTTCGTCAGGCTCAACTAGCATTAGAAAAATCTCGACAAATGGTGTATGGTACTAGGTTTGGAGTTGAAGTTGAACAAATCTGTTCATTAGACAAATTTAAAGCTGCATTAGCCTCTGCAGGTATATCGGTAGTATACTTCAAAGAGGCATCAAATGAACTATGTGAGGAATTATCTCCATTCATAAATACATTGTGTGTTAGATATCCCTCAGTTAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGCAGAAAGCATAAGAAGTGTTCCAACCTTCAAAATTTATAAAAATGGAGAGAAGGTAAAGGACATGATCCGGCCAACACATCAGTTATTAGAGGACTCAGTAAGAAAAAGTAGTAGTCTCTAG >Glyma13g36720.2 sequence type=CDS gene model=Glyma13g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAACACTCTGCAGCAACAGAGTCCCGAATCGAAACGACTCGATCTGGGTTCCAACGCTCGCCGGCCATGCCACCGGAGATCGGTCTCCGCCGGAGCTCCGTTAATTTATTCCGGCGGAGCAACCTTGCTCCCGAGCGGGAACATTTGCCCGTCGGGAAAGATCCTCAAACCCGGTTTACCCTCTCGCGGGCCGAACCGGACCGACGTGTTGGGCTCGGGCACCGTGAACTACGGCCGGGGCAGCATAGTGCGCGGTGGCTCGGGCAATATTCCGGTGCCCGCGGCCGCACCGCCGCTTACGGTGAAGCGCGCGATGAGCGGCTCCGATCCCGAGGAAGTGAAGAGGGCTGGGAATGAATTGTACAGAGGCGGGAACTTTGTAGAGGCGCTGGCAATGTACGATCGCGCCGTCGCCATCTCGCCGGGAAACGCCGCATGCCGGAGCAACCGCGCGGCGGCGCTCACGGCGCTGGGGAGGCTCGCCGAGGCCGCGAGGGAGTGCCTCGAGGCGGTAAAGTTGAACCCTGCTTATGCCAGGGCGCACAAGAGACTTGCTTCTCTTTATCTAAGATTTGGGCAGGTTGAGAATTCGCGGCGGCACTTGTGTCTCTCTGGGAATCAAGAGGATCAGTCTGAGGAGCAGAAGCTGGTGTTGTTGGAGAAGCATTTGAATCGATGCGCCGATGCGCGAAAATTCGGTGATTGGAAGAGGGTGCTTAGGGAATCAGAAGCAGCCATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTTGCTTGCAAGGTGGAAGCCTATTTAAAACTGCATCAACTTGAAGATGCTGATTCCAGTCTCTTGAATGTTCCGAAGTTGGAAGGTTGTCCTCCAGCGTGTTCTCAGACCAAGTTCTTTGGTATGGTTGGCGAAGCCTATGTTCCTTTCGTGTGTGCACAGGTTGAGATGGCGTTGGGAAGGTTTGAGAATGCTGTTGCGGCTGCAGAAAAGGCTAGCATGTTAGATTACGGTAATGTTGAAGTTGGTAGGATTGTAAATGTCGTGAAAATGGTGGCAAGAGCTCGTTCGAGGGGCAATGAACTTTTCAGCTCTGGCATGTTCTCTGAAGCTTGTTCTGCTTATGGGGAGGGCCTCAAGTATGACAACTCCAACCATGTTCTATATTGCAATAGGGCAATTTGTTGGTCTAAACTTGGACTGTGGGAACAATCGGTTCAAGACTGCAGCCAAGCTCTTAACATTCAACCAAATTACACCAAGGCCCTTTTCCGCAGGGCTGCATCAAACACAAAGATGCATGATCTTGTTGCAGCTTGA
>Glyma13g36720.1 sequence type=predicted peptide gene model=Glyma13g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNTLQQQSPESKRLDLGSNARRPCHRRSVSAGAPLIYSGGATLLPSGNICPSGKILKPGLPSRGPNRTDVLGSGTVNYGRGSIVRGGSGNIPVPAAAPPLTVKRAMSGSDPEEVKRAGNELYRGGNFVEALAMYDRAVAISPGNAACRSNRAAALTALGRLAEAARECLEAVKLNPAYARAHKRLASLYLRFGQVENSRRHLCLSGNQEDQSEEQKLVLLEKHLNRCADARKFGDWKRVLRESEAAIAVGADFSPQIVACKVEAYLKLHQLEDADSSLLNVPKLEGCPPACSQTKFFGMVGEAYVPFVCAQVEMALGRFENAVAAAEKASMLDYGNVEVGRIVNVVKMVARARSRGNELFSSGMFSEACSAYGEGLKYDNSNHVLYCNRAICWSKLGLWEQSVQDCSQALNIQPNYTKALFRRAASNTKLERWSEVVKDYQALKRELPNDNEVAESLRQAQLALEKSRQMVYGTRFGVEVEQICSLDKFKAALASAGISVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEECLAIAKAESIRSVPTFKIYKNGEKVKDMIRPTHQLLEDSVRKSSSL* >Glyma13g36720.2 sequence type=predicted peptide gene model=Glyma13g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNTLQQQSPESKRLDLGSNARRPCHRRSVSAGAPLIYSGGATLLPSGNICPSGKILKPGLPSRGPNRTDVLGSGTVNYGRGSIVRGGSGNIPVPAAAPPLTVKRAMSGSDPEEVKRAGNELYRGGNFVEALAMYDRAVAISPGNAACRSNRAAALTALGRLAEAARECLEAVKLNPAYARAHKRLASLYLRFGQVENSRRHLCLSGNQEDQSEEQKLVLLEKHLNRCADARKFGDWKRVLRESEAAIAVGADFSPQIVACKVEAYLKLHQLEDADSSLLNVPKLEGCPPACSQTKFFGMVGEAYVPFVCAQVEMALGRFENAVAAAEKASMLDYGNVEVGRIVNVVKMVARARSRGNELFSSGMFSEACSAYGEGLKYDNSNHVLYCNRAICWSKLGLWEQSVQDCSQALNIQPNYTKALFRRAASNTKMHDLVAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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