SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21470 | AT | Annotation by Michelle Graham. TAIR10: riboflavin kinase/FMN hydrolase | chr4:11431284-11433197 FORWARD LENGTH=379 | SoyBase | E_val: 1.00E-87 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009231 | GO-bp | Annotation by Michelle Graham. GO Biological Process: riboflavin biosynthetic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003919 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN adenylyltransferase activity | SoyBase | N/A | ISS |
| GO:0008531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: riboflavin kinase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2914 | KOG | Predicted haloacid-halidohydrolase and related hydrolases | JGI | ISS | |
| PTHR18901 | Panther | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_B9SRC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-deoxyglucose-6-phosphate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SRC3_RICCO | SoyBase | E_val: 8.00E-122 | ISS |
| UniRef100_UPI000233BD6A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BD6A related cluster n=1 Tax=unknown RepID=UPI000233BD6A | SoyBase | E_val: 0 | ISS |
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Glyma13g36701 not represented in the dataset |
Glyma13g36701 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g33790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g291000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g36701.1 sequence type=CDS gene model=Glyma13g36701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTGCTGCTGTGAGTCCAAAGGCTGCAATGAAGGAGCCAAGGTTTTGGCTGTCATTTTTGACTTAGATGGCACCCTTTTGAATACTGAAAGGGCAACAAGGGGTGTTTTGAATGAGTTTTTGGCAAGGTATGGGAAAGAACTTGACAGGGAGAAGGAAGAGAAGAAGAGGTTGGGGATGACACAAAAGGATTCAGCAGCTATAATTGTAAATGACTATGAACTTCCATTGACTCCTGACCAATTTATCAAAGAAATCACTCCTCTCTACAGGGAAAGGTGGGCAAAGGCCAAAGCATTACCTGGTGCTAATCGCCTTGTCAAACATCTCCAGAAAAATGGAGTGCCAATGGGTCTTGCCTCAAATTCCTTGCGAGAATATGTAGATGCAAAAATTTCTCATCACAAAGGTTGGAAAGAAAGCTTTTCTGTAATTCTTGGAAGTGATCAAGTTAAGTCTGGGAAGCCTTCTCCATATTTATTTGAAGAAGCTGCCAAGAAAATAGGTGTAGATGCAATTAATTGCCTGGTGATTGAGGATTCCTTGGTTGGTGTCAAGGCAGCCAATGCTGCAAAAATGAAGATAGTGGCTGTCCCATCTCGAAGGGAAGCTGATTGTCACGGGCTAGCAAATGTTGTTCTTCACTCACTTTTAGAGTTTCAACCTGAGCTATGGGGTCTTCCACCTTTTGATGACTGGTTAGATAACACACTACCTATTGACCCAATACATCTGAGTGGTTTGTATGTTAGTGGATGTCTAGAGGAAGCGACAGAGAATGCAACACTTGTTTTTCCTGATCAAGCTGTTGGGCTTTACTTCGGTTGGGCCAAGGTCGATACAGATGGGAACTTCAAGATATTGGTTAGCATTAATATTGACTTCTCCTGTGTTGGCTACAAAAGAATTCATGTTTATCTTATTGATGCAAACAGTGACCTTAAACATAAGCAGAAGATGCAAATCCATCTTGTTGGCTACATAAGAGCGTGGGATAACAAGGAATTCACGTCAACGGAATTGGAGAAACTCGAAGAATACAAGTCTATTGCGAGAGCTTCACTGTATTTGCCATCATTCACTTGTTTATAG
>Glyma13g36701.1 sequence type=predicted peptide gene model=Glyma13g36701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCCCESKGCNEGAKVLAVIFDLDGTLLNTERATRGVLNEFLARYGKELDREKEEKKRLGMTQKDSAAIIVNDYELPLTPDQFIKEITPLYRERWAKAKALPGANRLVKHLQKNGVPMGLASNSLREYVDAKISHHKGWKESFSVILGSDQVKSGKPSPYLFEEAAKKIGVDAINCLVIEDSLVGVKAANAAKMKIVAVPSRREADCHGLANVVLHSLLEFQPELWGLPPFDDWLDNTLPIDPIHLSGLYVSGCLEEATENATLVFPDQAVGLYFGWAKVDTDGNFKILVSINIDFSCVGYKRIHVYLIDANSDLKHKQKMQIHLVGYIRAWDNKEFTSTELEKLEEYKSIARASLYLPSFTCL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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