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Report for Sequence Feature Glyma13g36670

Feature Type:gene_model
Chromosome:Gm13
Start:37928610
stop:37935431
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g36670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42600AT Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 2 | chr2:17734541-17738679 REVERSE LENGTH=963 SoyBaseE_val: 0ISS
GO:0006099GO-bp Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle SoyBaseN/AISS
GO:0015977GO-bp Annotation by Michelle Graham. GO Biological Process: carbon fixation SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008964GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity SoyBaseN/AISS
PF00311PFAM Phosphoenolpyruvate carboxylase JGI ISS
UniRef100_I1M3L8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3L8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6Q2Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g36670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g36670
ParalogEvidenceComments
Glyma12g33820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g36670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g290700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g36670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g36670
>Glyma13g36670.1   sequence type=CDS   gene model=Glyma13g36670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCGTAACATCGAGAAGATGGCCTCAATTGATGCTCAGTTGAGGTTGCTGGCACCACGCAAGGTGTCTGATGATGACAAACTCGTTGAGTATGATGCTTTGTTGTTGGACCGCTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTCCAAGATTGTTATGAGCTGTCAGCTGAGTACGAAGGAGAGCATAAGCCTGATAAGTTGGAGGAACTTGGGAATATGCTGACTGGTCTTGATGCTGGGGATTCAATTGTTATTGCCAAGTCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTACCGAAGAAGGATCAAGTTGCTGAAGAAGGGTGATTTTGCTGATGAGAACTCTGCCATTACTGAGTCAGACATTGAAGAGACCTTCAAGAAGCTTGTGGCTCAACTGAAGAAGACACCCCAGGAAATCTTTGATGCTTTGAAGAACCAAACTGTGGATTTGGTCCTAACTGCTCATCCTACTCAGTCTGTTCGCAGATCGTTGCTGCAAAAGCATGGAAGACTAATTATTTCTGTTGGTGATCATTCTCTTCAGGATAAAGGAATTTGTTTGACACAATTATATGCTAAGGACATTACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACGGATGAAATTCGAAGGACTCCTCCTACCCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCACAGTTTCTGCGTCGGGTAGATACAGCTCTGAAGAACATTGGAATTAATGAACGTGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAATCCTAGAGTAACCCCTGAAGTTACCAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATGTGTACTTCTCTCAGATAGAAGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCACTGACGAGCTCCGTGATCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTACATTGAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATTAGCCAATGGGACCTCTGATATCCCCGAGGAGACAACTTTCACTTACGTTGAGCAGTTCCTGGAGCCTCTTGAACAATGCTATAGATCACTCTGTGCCTGTGGTGACAGACCTATAGCAGATGGAAGCCTCCTTGATTTCCTGCGGCAAGTTTCGACATTTGGACTCTCACTTGTGAGACTTGACATCCGTCAAGAGTCAGATAGGCACACTGATGTCATGGATGCAATCACAAAACACTTAGAGATCGGATCATACCGAGAGTGGCCCGAGGAAAAGAGGCAGGAGTGGCTCTTATCTGAACTACGTGGAAAACGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCAATGATGTTTTGGAAACCTTCCATGTCATTTCAGAACTTCCCTCAGACAACTTCGGTGCCTACATCATATCAATGGCAACAGCCCCATCTGATGTGCTTGCTGTTGAGCTCTTACAACGCGAGTGCCATGTGAAGCAGCCTCTAAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCTGCTCCGGCTGCTGTGGCGCGGCTTTTCTCGATAGATTGGTACAGAGACCGCATCAATGGGAAGCAAGAAGTTATGATAGGGTACTCAGACTCGGGAAAAGATGCTGGCCGTCTTTCTGCGGCTTGGGCGCTTTACAAGGCTCAAGAAGAACTTGTGAAGGTTGCTAAGGAGTATGGTGTTAAACTTACAATGTTTCATGGGAGGGGAGGGACTGTTGGAAGAGGAGGAGGTCCAACTCATCTTGCTATATTGTCTCAGCCACCAGACACCATCCATGGCTCACTTCGGGTGACGGTTCAGGGTGAAGTCATTGAGCAGTCTTTTGGAGAGGAGCACTTGTGCTTTAGGACACTTCAGAGGTTCACTGCAGCTACACTTGAGCATGGAATGCATCCTCCTGTGTCACCGAAACCAGAATGGCGCGCCCTCATGGACGAGATGGCTGTCATTGCAACAAAGGAGTATCGCTCTGTTGTTTTCAAAGAGCCTCGTTTTGTTGAATATTTCAGATGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGCGAAAGCCAAGTGGAGGAATTGAATCACTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACGAGGTTTCATTTGCCAGTGTGGCTTGGTTTTGGGTCAGCATTTAAGCATGTAGTTGAGAAAGATCCAAAGAATCTCCAAATGCTTCAGGACATGTACAATCAATGGCCTTTCTTCAGGGTCACCCTTGACTTGGTTGAGATGGTGTTCGCCAAGGGAGACCCCGGGATTGCATCCCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTCTCCTCCAGGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCCTACACATTGAAGCGGATCCGTGATCCTGACTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCAGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCTCCTGGTCTTGAGGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAATACAGGTTAA
Predicted protein sequences of Glyma13g36670
>Glyma13g36670.1   sequence type=predicted peptide   gene model=Glyma13g36670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHKPDKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKKLVAQLKKTPQEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRLIISVGDHSLQDKGICLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANVYFSQIEDLMFELSMWRCTDELRDRAHELHRSSKRDAKHYIEFWKQVPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTYVEQFLEPLEQCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYREWPEEKRQEWLLSELRGKRPLFGHDLPKTEEINDVLETFHVISELPSDNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSVVFKEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHVVEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIASLFDKLLVSEELRPFGENLRSKFEETKRFLLQVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG*






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