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Report for Sequence Feature Glyma13g36540

Feature Type:gene_model
Chromosome:Gm13
Start:37784521
stop:37787501
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58710AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 69 | chr3:21715192-21716766 FORWARD LENGTH=271 SoyBaseE_val: 6.00E-69ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_A7LHI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY52 n=1 Tax=Glycine max RepID=A7LHI8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1M3K3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3K3_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY52 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g33990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g289400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g36540.1   sequence type=CDS   gene model=Glyma13g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCACCGTAGATTCAGCAAATTAATACATGTGGCTGACCCAGATGAGCCTGAGTCCGGGCCCGAGCCCGCCTCAGAAGCTGGGCCTGCTTCTCCTTCTTCCGGTGAAGACACAAAAACTGAAGCACCGTCACCCAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAAAATTATCCACCGTCGGATTCATGGGCCTGGAGGAAGTACGGCCAAAAGCCCATCAAAGGCTCCCCTTACCCAAGGGGATATTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGCGAAGCCGTGTGGACCCCACAAAGCTAATAGTCACCTACGCATATGAACACAACCACTCCCTCCCTCTCCCAAAATCAAATTCCTCCGCGGCTTCCGCCGCTGTAAGCGACGGCGCCACCTCCTCCTCACCGGCAGATTCCGCCGCCAGGTACCCGCCGGAGGAGGAGATGAAGGTGTTCGCGACGGACTCAGACCTCGAACTCGCCGGCGACGCGGCGGTTCTGCTCAGCCACCACCACCACCACCACTTCGGGTGGTTCGATGACGTGACGTCCACCGGCGTCCTCGAAAGCCCGATCTGCGGCGAGGTGGATGACGTGGCGGTGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGGCGAGTTGCCGGAGTGCTCGGCGGTTTTCCGGCGGATGAATATTCCGGCGACCAGCGCGATCCGGTGCGGCGGCATCACAGGATAA

>Glyma13g36540.1   sequence type=predicted peptide   gene model=Glyma13g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHRRFSKLIHVADPDEPESGPEPASEAGPASPSSGEDTKTEAPSPKKRREMKKRVVTIPIGDVDGSKSKGENYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAYEHNHSLPLPKSNSSAASAAVSDGATSSSPADSAARYPPEEEMKVFATDSDLELAGDAAVLLSHHHHHHFGWFDDVTSTGVLESPICGEVDDVAVPMREEDESLFADLGELPECSAVFRRMNIPATSAIRCGGITG*







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