Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma13g36530): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma13g36530): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma13g36530
Feature Type: gene_model
Chromosome: Gm13
Start: 37777417
stop: 37782510
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g36530
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G06400 AT
Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein | chr1:1951089-1952686 REVERSE LENGTH=216
SoyBase E_val: 1.00E-132 ISS
GO:0007264 GO-bp
Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0015031 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein transport
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003924 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTPase activity
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG0087
KOG
GTPase Rab11/YPT3, small G protein superfamily
JGI ISS
KOG0091
KOG
GTPase Rab39, small G protein superfamily
JGI ISS
PTHR24073 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24073:SF213 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00071 PFAM
Ras family
JGI ISS
UniRef100_I1M3K1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3K1_SOYBN
SoyBase E_val: 3.00E-158 ISS
UniRef100_Q8LJR5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Small GTP-binding protein n=1 Tax=Glycine max RepID=Q8LJR5_SOYBN
SoyBase E_val: 6.00E-156 ISS
Expression Patterns of Glyma13g36530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g36530
Paralog Evidence Comments
Glyma12g34000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g36530 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g289300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g36530
Transcripts of Glyma13g36530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g36530.2 sequence type=transcript gene model=Glyma13g36530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGAAAAAGCGCGTAAAAGTAAAAGAGGGAAAGCAAGAGGTGCGGGAAGAAGGGAGAAAGGAAAGGAAAGGAAAAGAAGAAAACAAGAAGGGTTTGGTAGTTTGTTTGATTATCTACGGGTTGTTATCATTTCCATCCATTTAATTCCCCACAACCACGCTCACCTAAGTTTCAATTTCAATCCCTTTTCTTTTTCCGTTACAAAATAATTCAAAATTCCCTCCCTCATTTACCCTTGTTTGTGTAAAGTAGTAGCAGAGTGAGACTAGGTATCATCGATGGCAGGGTACAAGGGCGATGACGAATACGATTACCTCTTCAAGCTGGTTCTCATCGGCGATTCCGGTGTCGGCAAGTCCAACCTGCTTTCGCGCTTCACGAGGAACGAGTTCAATTTGGAGTCCAAGTCCACCATAGGGGTTGAGTTCGCCACCAAGAGCTTGGACATCGATGCTAAGGTCATCAAGGCTCAGATTTGGGACACCGCTGGCCAGGAAAGGATTGAAGTTTTGTTGCTCTGGTACGGCGTTATGTTCAAGGATTGAAGTTTTGTTGCTCTGGTACCGTGCCATTACTAGTGCTTACTACCGAGGAGCTGTTGGTGCCTTACTTGTCTATGATGTCACACGCCGTGCTACATTTGAGAATGCTGCAAGGTGGTTGAAAGAGTTGAGAGATCACACAGACCCCAACATTGTGGTCATGCTTATTGGAAATAAGTCGGATCTTCGACACCTTGTTGCTGTCCCAACAGAAGATGGAAAATCTTTTGCAGAGAAGGAATCTCTCTACTTCATGGAGACTTCTGCTTTAGAAGCAACAAATGTTGAAAATGCATTTACTGAGGTTCTTTCTCAGATATACCGCATAGTGAGCAAGAGAGCAGTTGAGGCCGGCAACAATGCCAGTTCTTCTGCTGTCCCGTCCAAAGGACAGACAATAAATGTGAAAGACGATTCCTCAGTTTTGAAGAAAATTGGATGCTGCTCAAACTAGATGCATCATCTATGGCAGTTGGTTTTTGTAGACTGTTTCATCTTGTAAATGCCTACACTGGAATCGTGATATCATGTAGAATAAGGCTAGTCTTGCATATTGTTTTGAATTTACAATTTACAAGCATCATCCATACATAGGATTATGTTTCCGTGAAACGGTCATTCTAAAGACGTGCTTGAAACAAATAGGTCTACATCAAAGTTCATATAGCTTAAGTTTTATTTGAAGGATTTTGATATTTGCTATGCTCTAATTATGGTGCAGCTAGTAACAATTCGAACGTCTGCTTTAAAATTGAAGTTTCAATGTATGGAGCTTGTGTTTAGTTTCGTTGAAATGTCTTCAGACAATATGGATCTTCGTGGTCATGGTAGAAGTTAGTTATTATTTTTT
Coding sequences of Glyma13g36530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g36530.1 sequence type=CDS gene model=Glyma13g36530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGGGTACAAGGGCGATGACGAATACGATTACCTCTTCAAGCTGGTTCTCATCGGCGATTCCGGTGTCGGCAAGTCCAACCTGCTTTCGCGCTTCACGAGGAACGAGTTCAATTTGGAGTCCAAGTCCACCATAGGGGTTGAGTTCGCCACCAAGAGCTTGGACATCGATGCTAAGGTCATCAAGGCTCAGATTTGGGACACCGCTGGCCAGGAAAGGTACCGTGCCATTACTAGTGCTTACTACCGAGGAGCTGTTGGTGCCTTACTTGTCTATGATGTCACACGCCGTGCTACATTTGAGAATGCTGCAAGGTGGTTGAAAGAGTTGAGAGATCACACAGACCCCAACATTGTGGTCATGCTTATTGGAAATAAGTCGGATCTTCGACACCTTGTTGCTGTCCCAACAGAAGATGGAAAATCTTTTGCAGAGAAGGAATCTCTCTACTTCATGGAGACTTCTGCTTTAGAAGCAACAAATGTTGAAAATGCATTTACTGAGGTTCTTTCTCAGATATACCGCATAGTGAGCAAGAGAGCAGTTGAGGCCGGCAACAATGCCAGTTCTTCTGCTGTCCCGTCCAAAGGACAGACAATAAATGTGAAAGACGATTCCTCAGTTTTGAAGAAAATTGGATGCTGCTCAAACTAG
>Glyma13g36530.2 sequence type=CDS gene model=Glyma13g36530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTAAGGTCATCAAGGCTCAGATTTGGGACACCGCTGGCCAGGAAAGGATTGAAGTTTTGTTGCTCTGGTACGGCGTTATGTTCAAGGATTGAAGTTTTGTTGCTCTGGTACCGTGCCATTACTAGTGCTTACTACCGAGGAGCTGTTGGTGCCTTACTTGTCTATGATGTCACACGCCGTGCTACATTTGAGAATGCTGCAAGGTGGTTGAAAGAGTTGAGAGATCACACAGACCCCAACATTGTGGTCATGCTTATTGGAAATAAGTCGGATCTTCGACACCTTGTTGCTGTCCCAACAGAAGATGGAAAATCTTTTGCAGAGAAGGAATCTCTCTACTTCATGGAGACTTCTGCTTTAGAAGCAACAAATGTTGAAAATGCATTTACTGAGGTTCTTTCTCAGATATACCGCATAGTGAGCAAGAGAGCAGTTGAGGCCGGCAACAATGCCAGTTCTTCTGCTGTCCCGTCCAAAGGACAGACAATAAATGTGAAAGACGATTCCTCAGTTTTGAAGAAAATTGGATGCTGCTCAAACTAG
Predicted protein sequences of Glyma13g36530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g36530.1 sequence type=predicted peptide gene model=Glyma13g36530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGYKGDDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLDIDAKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSKRAVEAGNNASSSAVPSKGQTINVKDDSSVLKKIGCCSN*
>Glyma13g36530.2 sequence type=predicted peptide gene model=Glyma13g36530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRSSRLRFGTPLARKGLKFCCSGTALCSRIEVLLLWYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSKRAVEAGNNASSSAVPSKGQTINVKDDSSVLKKIGCCSN*