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Report for Sequence Feature Glyma13g36480

Feature Type:gene_model
Chromosome:Gm13
Start:37759614
stop:37761022
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g36480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29320AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr1:10255355-10258238 FORWARD LENGTH=468 SoyBaseE_val: 1.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
UniRef100_B9RAJ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RAJ5_RICCO SoyBaseE_val: 3.00E-15ISS
UniRef100_I1KI76UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI76_SOYBN SoyBaseE_val: 9.00E-20ISS

Expression Patterns of Glyma13g36480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g36480 not represented in the dataset
Glyma13g36480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g36480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma13g36480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g36480
>Glyma13g36480.1   sequence type=CDS   gene model=Glyma13g36480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGAGGGCATACCCGTGTGTTTGGCCGTGTGAAAACAACATGCTGTTTTAAAATTCATTTCCCGCTCTTTTTTTTGCCAAGGCTTTTAAGCTGGAGAATTAAAATTCTCTTCTTAAAGAAAACTTTCCAAAACCTGTATTTCCTTTATAATCTTCATCTTGTTGGGCTGGAGTTCCTGCAGAGCACACCTGAGCTTCAAGAGAGATATGTATTGATTGACTTTTATTTTTTCCAACATTTTTACAGGATTTCTTGTCATTTGCTACTAAGGGAATCAATAATCAAATTGAGCAAGCTATCCTCAGGGCTGATAAAATTGGGGTTAAAGTCATCAGCCTTGCTCCATTGCTTAAGCATAGTAAAACAAACGGGAAAAATGCTTGGATGTTTTTCTGGAAAATGCTCTGGAAGCATCAGATCCATAGTCAAGCACCCTGAGCTACCTGTAATAGCTTCTTGTGGTGAGTGCTTCTCTTTGATTTCCCTTTATTGCATATTCCTTGAATATAATTCCTGTCATCAATTCAATTTCATATTTTTCATTTCAGGACTGGACAACTATTTACGCCTTTGGGATACAAAGACAAGACAGCTTCTTTCTGCTGTA
Predicted protein sequences of Glyma13g36480
>Glyma13g36480.1   sequence type=predicted peptide   gene model=Glyma13g36480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KRGHTRVFGRVKTTCCFKIHFPLFFLPRLLSWRIKILFLKKTFQNLYFLYNLHLVGLEFLQSTPELQERYVLIDFYFFQHFYRISCHLLLRESIIKLSKLSSGLIKLGLKSSALLHCLSIVKQTGKMLGCFSGKCSGSIRSIVKHPELPVIASCGECFSLISLYCIFLEYNSCHQFNFIFFISGLDNYLRLWDTKTRQLLSAV






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