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Report for Sequence Feature Glyma13g36300
Feature Type: gene_model
Chromosome: Gm13
Start: 37579116
stop: 37587803
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g36300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G20720 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr3:7240098-7246754 FORWARD LENGTH=1199
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2955
KOG
Uncharacterized conserved protein
JGI ISS
PTHR22774 Panther
UNCHARACTERIZED
JGI ISS
PTHR22774:SF3 Panther
gb def: OSJNBa0089N06.9 protein
JGI ISS
UniRef100_Q00RF9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: H0303G06.13 protein n=2 Tax=Oryza sativa RepID=Q00RF9_ORYSA
SoyBase E_val: 0 ISS
UniRef100_UPI000233BAD6 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BAD6 related cluster n=1 Tax=unknown RepID=UPI000233BAD6
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g36300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g36300
Paralog Evidence Comments
Glyma12g34250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g36300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g287100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g36300
Coding sequences of Glyma13g36300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g36300.2 sequence type=CDS gene model=Glyma13g36300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATCAATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAATCCTTCTCCCGCGAACAGTTCAAGCTCCAAGGCCGCACCGTTCACCTCTCCAATTTAGATATCGACGGCGACGCCTTGCATTCCAGCGTCGGATTGCCGCCGGCGCTCAACGTCGCCACCGCCAAAGTCGGCAAACTAGAGATTACACTTCCGTCGGTGAGCAATGTGCAAACGGAGCCTATCGTGGTGCATATTGATAGACTCGATCTGGTTCTCGAGGAGAGTTCTGATTCTGATGAATCTCTTAGTTCGAACTGTTCCACGCCGTCGGCTGCCTCCGTCAAGGGAAGTGGTTATGGTTTCGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACAGTTAATCTATTACTTGAAACTCGTGGTGGTTCTCGTCGCCAAGTGGGAGCAACATGGGCTCCACCTATGGCATCTATCACCATACGCAATCTTTTGTTGTATACCACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCCAGTAACAAGTACATATACGTCTTCAAAAAGCTGGAATGGCAATCTTTGTCTATTGATCTTTTACCTCATCCCGACATGTTCACAGAGGCTGCATTAGGCCACTCTCAAGAGGGATCAAACTTTAGGGATGATGATGGCGCAAAGCGTGTATTCTTTGGAGGAGAGCGTTTTATAGAAGGAGTATCAGGAGAAGCATATATCACAATTCAGAGAACTGAGTTGAATAGTCCACTTGGGCTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCATTAAGCGAACCAGGATTACGTGCACTTCTCCGCTTTATGACGGGAGTATATGTATGTCTAAACAGGGGTGATGTTGATTCCAAGATTCAGCAGCGATCCACTGAAGCAGCTGGGCGTTCTCTTGTCTCAATTGTCATAGATCATATATTTCTTTGTATTAAAGATACTGAATTCCAGCTTGAGCTTTTGATGCAGTCCCTCTGCTTTTCTCGGGCCAGTCTTTCTGAAGGAGATAATGATAATAACTTGACCAGAATTACAATTGGTGGCTTATTTTTAAGGGACACCTTTTGTAGCCCTCCATGTATCTTAGTGCAACCTTCAATGCAAGCTGTCACAAAAGATGCTTTCCATGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTACAAGAACAGGAGTGGCAATTGATCGAGGGAACCCCTCTAATATGCCTCCATGCTCTTAAGATCATGCCTTCTCCACTTCCACCATCCTTTGCTTCTGAAACTGTTATTGACTGTCAGCCTCTTGTGATTCATCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCTGATGGAATTGTTGTCAATCCTGGTGACATTTTATCAGATTTCTCAGTGAAATCTTTTATTTTCAATCTCAAAGGACTGGATCTTACAGTTCCTTTTGACAAGACCAAATTGGATATTTCCAAAAGTGACATGGACAATACAGTCCAGACCTCCTTTGCTGGAGCAAGGCTTCATATTGAAAGCCTTTGTTTTTTAAATTCACCCTCACTGAAACTAAGAATTCTGAACCTGGAGAAGGATCCTGCTTGCTTCAGTCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGGAGAAATGGACTGCTAGAGCATCCCAGCTTACTTTGTCTCTGGAAGCATGTACTGACAGAACTGGATGTCAAAATTCCCTTGAACAGACATCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGTAACTGCTGATGGCAGTCCATTGTTACAAGTTCCCCCTCCTGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGAACAGTATCTGTCCAACACTTCTGTTGAACAATTGTTTTTCGTCCTGGATCTATACGGTTATTTTGGGAGAGTTAGTGAAAAGATAGCAAAGGCCGGAAAAAGGAAACAATTGGAGGACATTAGGGATACATCTTTTAGTGGAAAGCTGATGGACAAGGTTCCTAGTGATGCTTCTGTGAGTTTATCAGTGAAAAACCTCCAACTTCGATTTCTGGAGTCATCTTCTGTGAATATTGAGGGGATGCCTTTAGTGCAATTTGTTGGAGATGATCTGTTTACTAGTGCCACTCATAGAACCCTTGGTGGGGCCATTATTGTTTCATCCATTTTACGTTGGGAGAGTGTTGTGATAGGTTGTGTAGATGATGAGGGGCACTTGCCGTGTGAAAATGGCTCGTTCTTGAGTTCTAAGGAAAATGCTCTCTTATTGAGTGATAATGGATATCCTCAACTAAGAACTGTTTTCTGGGTGCATAAGAACGAGAAACATCTATTGAATGGAAATGCTCATTCAGTCCCTTTTCTGGACATAAGCATGGAGCATGTCATACCATTATATGAACAAGATTTGGAGTCTCATAGTTTGAATGTCTCAGCTTCTGTATCTGGTGTTCGTCTTGCTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGGACCTGATGGAGCTCCTGGGATTGGTCTCTGTAAAGGGTTGGAAAACTTACAAAAAGGACCATTGTCAAAACTTTTTAAGGCAACTCCTCTCATTGTTGATAATTCAGAAGATGTTGGAAGTGGAAGAGAAGGGAAAGAAACTGGTTTTCCTCAACTGAAAAAGCCTGGTGATGTGGATGTAACTGTAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATGCACAAGAGACAGCTGAAAGATGGTGGTTCTCAAGCCATGTAGATGAAGACAGAGAAGAGAGGAGTTGGCATGCATCTTTCCATGGTTTAAGAGTAAATGCAAAAAGTAGCCCAACGAATATTCCAGATGGAAAAGGGCAATTGCAAAGAATAAAACAACATCCAGTAGAATTGATTACTGTTGGAATTCAAGGTCTGCAAATCTTGAAGCCTCATTTGCAAAAAGACATTCCTTCATCAACACCTATTGCAAATGGGGGTAAAGGATTCACCAACACAGTTGGAGGAATTGGTGTTGAAGTTCGCTTGATATTGGGTGGGGAGAATGTTGATGATGAAATGGTCAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAACCGATTGAGGCGGTTGTAACCAAGGATGAGGTTCAGCACCTCACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACTGCTGGAATTATAAGGTTGCTGAAGTTAGAAGGTTCTGTTGGTCAGTCTGTAATAGACCAACTCGGGCACCTAGGAAGTGAAGGCATTGATAAGATTTTCTCTTCTGAAAAGTACAGTAGAGACGGAAGTGTTGGTAGTAGAGGACTTTCTCCATTGCCGAATCTCACCATAAATGAGGAATCACACAAAACTTCAGAGCAAACATTGACTTTGCTTGAGGAAGCACTTGTGGATTCACAGGCTAAACTTAATGATTTAATCAGTGATATTGGTACTTCCGAGTCTTCTTCCTCTCAACACCTTACCGTCATCCGACTTAGTCAAAAGATAGAGACTATGCACGACCTGTTGATGCAATTACGGAATCAAATCTGA
Predicted protein sequences of Glyma13g36300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g36300.2 sequence type=predicted peptide gene model=Glyma13g36300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESILGRALEYTLKYWLKSFSREQFKLQGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITLPSVSNVQTEPIVVHIDRLDLVLEESSDSDESLSSNCSTPSAASVKGSGYGFADKIADGMTIQIQTVNLLLETRGGSRRQVGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSNKYIYVFKKLEWQSLSIDLLPHPDMFTEAALGHSQEGSNFRDDDGAKRVFFGGERFIEGVSGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDSKIQQRSTEAAGRSLVSIVIDHIFLCIKDTEFQLELLMQSLCFSRASLSEGDNDNNLTRITIGGLFLRDTFCSPPCILVQPSMQAVTKDAFHVPEFARSFCPPIYPLQEQEWQLIEGTPLICLHALKIMPSPLPPSFASETVIDCQPLVIHLQEESCLRISSLLADGIVVNPGDILSDFSVKSFIFNLKGLDLTVPFDKTKLDISKSDMDNTVQTSFAGARLHIESLCFLNSPSLKLRILNLEKDPACFSLWEGQPIDASQEKWTARASQLTLSLEACTDRTGCQNSLEQTSGLWRCVDLKDACIEVAMVTADGSPLLQVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYGYFGRVSEKIAKAGKRKQLEDIRDTSFSGKLMDKVPSDASVSLSVKNLQLRFLESSSVNIEGMPLVQFVGDDLFTSATHRTLGGAIIVSSILRWESVVIGCVDDEGHLPCENGSFLSSKENALLLSDNGYPQLRTVFWVHKNEKHLLNGNAHSVPFLDISMEHVIPLYEQDLESHSLNVSASVSGVRLAGGMNYAEALLHRFGILGPDGAPGIGLCKGLENLQKGPLSKLFKATPLIVDNSEDVGSGREGKETGFPQLKKPGDVDVTVELRDWLFALEDAQETAERWWFSSHVDEDREERSWHASFHGLRVNAKSSPTNIPDGKGQLQRIKQHPVELITVGIQGLQILKPHLQKDIPSSTPIANGGKGFTNTVGGIGVEVRLILGGENVDDEMVNWEVENLKFSVKQPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGHLGSEGIDKIFSSEKYSRDGSVGSRGLSPLPNLTINEESHKTSEQTLTLLEEALVDSQAKLNDLISDIGTSESSSSQHLTVIRLSQKIETMHDLLMQLRNQI*