SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23960 | AT | Annotation by Michelle Graham. TAIR10: terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545 | SoyBase | E_val: 1.00E-125 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0016106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sesquiterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0051762 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sesquiterpene biosynthetic process | SoyBase | N/A | ISS |
| GO:0080027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to herbivore | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0010333 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| GO:0080016 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: (-)-E-beta-caryophyllene synthase activity | SoyBase | N/A | ISS |
| GO:0080017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-humulene synthase activity | SoyBase | N/A | ISS |
| PF01397 | PFAM | Terpene synthase, N-terminal domain | JGI | ISS | |
| PF03936 | PFAM | Terpene synthase family, metal binding domain | JGI | ISS | |
| UniRef100_A2Q649 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: (+)-delta-cadinene synthase isozyme C2 n=1 Tax=Medicago truncatula RepID=A2Q649_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BC05 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BC05 related cluster n=1 Tax=unknown RepID=UPI000233BC05 | SoyBase | E_val: 0 | ISS |
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Glyma13g36090 not represented in the dataset |
Glyma13g36090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g34430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g285200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g36090.2 sequence type=CDS gene model=Glyma13g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCCTTCCAGCTTCAACACTTGCCTCAATTCAACATGCAGTATCTGACCAGCTCAAGCGACCTTGCGTGAGTTTTGCTCCTTGCATATGGGGAGATACTTTCCTTGAATATGCTTCTCAATTTGAGGGAGTCAATGATGACGAGAAGCAGCAAGCTCAAACACTAAGGAATGAGGTGCAAACGATGTTTCAATCATCAATCGATCAAAATATCATACAAAAATTAAACTTGATTGACTCAGTCCAACGTTTCGGTGTATCCTATCATTTCCAACAAGAAATCAATCAAGCATTGGAACAAATTCACAACAGTTTCACAAAAAATAACACCATCAGTGATGATGGCAATCATCACTCTCTTGCTCTACTCTTTCGTTTGCTTAGACAGCAAGGATATCAAATTTCATCAAGTGCATTTAACAAATTCAAAAATGATCAAGGAAACTTTAGTGAAACACTTGCTAATGATATTCAAGGGTTGTGTAGCTTGTATGAAGCTGCACATCTAAGAACTCCCGAAGATGACATATTGGAGGAAGCATGTGACTTCTCAAATACTCACATGAAGTCCTTGGCCAACCAATTAAGCCCATCTCTTGCAGCACAAATCAATCACTGCTTAAGACTACCTCTTAACAAGAGTTTAATTAGGTTCGAGGCAAGGTGTCACATGAATCTCTATGAAAAAGATGCATCTCATAACAAAACTCTACTAACCTTTGCAAAAGTAGATTTCAATATTCTTCAAAAACTACATCAAAAAGAAATTAGCACTATCACCAAGTGGTGGAAAAAGTCAAACTTTGAGACTAAGGTCCCTTACGCTAGAGGTAGGTTGGTTGAGGCCTACCTTTGGTCATTGGCTATGTCCTACAAACCTGAACACAGCCTCGCAAGAATGTTTGTGGGAAAATTGATTGCTGTTGTTTGTCTTCTAGACGATACTTATGATGCTTATGGCACTATTCAAGAACTTGAGCTATTCACAGAAGCAATTCAAAGATGGAATAAGAGTCCCATTGAATCTCTTCCACAATGCATGAAAGTAGTATTTGATACAGTTGTAGAACTGGGTGAAGAAATAGAATTGGCGACAACGGAGAGTGGGAAATCAAGCTTTGTAGTGCAATATTTTAAACAAGCTGTTTTTAACTTAATAAAAGGCTACATGGCTGAGGCAAAATGGTGTCACGAGGGTTACATTCCAACATATGATGAATATAAAGTTAATGGAATTTTGACTTCTTGTTTCCCTCTTTTCATTACATCATTTATTGGCTTGGGAGAATTTGCAAACAAAGATGTGTTTGATTGGATTTTTAGTGATCCAAATATCATTAAAGTGGTATCAATTATTGGTAGAGTATTGGACGACATGGGCTCACATAAGTTTGAGCAACAAAGAGTACATGTTGCCTCAGCTGTGGAATGTTGCATGAAGCAATATAACATTTCACAAGCAGAGGCGTACCACCTTATCCATAATGACGTTGAAGATGGTTGGAAGGTTATAAATGAAGAGTGCCTTAAGTCAAATGACATCCCAAAATCTGTGCTTGATTGTGTAGTTAATTTGGCACGCATGTCTATGGTTTCATATGAAAACCACCAGGATAAATTCACTAATGGAGAACTACTGAAAGGTTATGTGTCTTCATTGCTTATGGATCCCATGTGCCTTGAACTACACCAGTAG
>Glyma13g36090.2 sequence type=predicted peptide gene model=Glyma13g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLPASTLASIQHAVSDQLKRPCVSFAPCIWGDTFLEYASQFEGVNDDEKQQAQTLRNEVQTMFQSSIDQNIIQKLNLIDSVQRFGVSYHFQQEINQALEQIHNSFTKNNTISDDGNHHSLALLFRLLRQQGYQISSSAFNKFKNDQGNFSETLANDIQGLCSLYEAAHLRTPEDDILEEACDFSNTHMKSLANQLSPSLAAQINHCLRLPLNKSLIRFEARCHMNLYEKDASHNKTLLTFAKVDFNILQKLHQKEISTITKWWKKSNFETKVPYARGRLVEAYLWSLAMSYKPEHSLARMFVGKLIAVVCLLDDTYDAYGTIQELELFTEAIQRWNKSPIESLPQCMKVVFDTVVELGEEIELATTESGKSSFVVQYFKQAVFNLIKGYMAEAKWCHEGYIPTYDEYKVNGILTSCFPLFITSFIGLGEFANKDVFDWIFSDPNIIKVVSIIGRVLDDMGSHKFEQQRVHVASAVECCMKQYNISQAEAYHLIHNDVEDGWKVINEECLKSNDIPKSVLDCVVNLARMSMVSYENHQDKFTNGELLKGYVSSLLMDPMCLELHQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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