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Report for Sequence Feature Glyma13g35890

Feature Type:gene_model
Chromosome:Gm13
Start:37269811
stop:37270825
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54490AT Annotation by Michelle Graham. TAIR10: pinoid-binding protein 1 | chr5:22121458-22121841 FORWARD LENGTH=127 SoyBaseE_val: 6.00E-31ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF148Panther CALCIUM-BINDING EF HAND FAMILY PROTEIN JGI ISS
UniRef100_I1M3E8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3E8_SOYBN SoyBaseE_val: 7.00E-81ISS
UniRef100_Q2HVQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding EF-hand n=1 Tax=Medicago truncatula RepID=Q2HVQ3_MEDTR SoyBaseE_val: 2.00E-52ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35890 not represented in the dataset

Glyma13g35890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g34610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g282900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g35890.1   sequence type=CDS   gene model=Glyma13g35890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTGGACTACCTCTTAGACTTCGAGGACTACTTCCCTTCCATGATTTCGCGCATGGGAGCAGAAGGGTTCATTGCTGAGCTCTGCAACGGGTTCCGCTTGCTCATGGACGTGAACAAGGGCCTCATCACATTCGAGAGCCTGAAGCTGAACTGCTACTTGCTCGGTCTCGACGTCAGGGACGACGAGCTCGCCTGCATGCTCATAGAGGGTGATTTGGACGGCGATGGTGCTCTAAGCCAAATGGAGTTCTGCATTCTCATGTTTAGGCTCAGCCCTTGCTTGATGGATGATGGACCTAACAAAATGTGCACTCCTCAGGGTGCTTGTGGTGGTGGTGGTGATCCTATGTTGATGATGAATGTAATGTAA

>Glyma13g35890.1   sequence type=predicted peptide   gene model=Glyma13g35890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDYLLDFEDYFPSMISRMGAEGFIAELCNGFRLLMDVNKGLITFESLKLNCYLLGLDVRDDELACMLIEGDLDGDGALSQMEFCILMFRLSPCLMDDGPNKMCTPQGACGGGGDPMLMMNVM*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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