SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27340 | AT | Annotation by Michelle Graham. TAIR10: Met-10+ like family protein | chr4:13687366-13690370 REVERSE LENGTH=619 | SoyBase | E_val: 0 | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| KOG2078 | KOG | tRNA modification enzyme | JGI | ISS | |
| PTHR23245 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR23245:SF25 | Panther | METHIONINE 10+ HOMOLOG | JGI | ISS | |
| PF02475 | PFAM | Met-10+ like-protein | JGI | ISS | |
| UniRef100_F6H2F8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA (guanine(37)-N1)-methyltransferase 1 n=1 Tax=Vitis vinifera RepID=TRM51_VITVI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M3E7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3E7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g35870 not represented in the dataset |
Glyma13g35870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g34620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g282700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g35870.1 sequence type=CDS gene model=Glyma13g35870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAAGCAAGGTATTCCTAAAGCCCCATCTGGTTGGTCTTCTTCTTCCCTCTAAATTCGGCTTGGTCTTCCCTCACACAACCAAGCCTTCTTCTTCCCTTCCCACCACTTTCTTCATTTCACACTTCTCCTCTGCCCCTCTCTCTTCCTACGGACCCTCCCTCCACAAGGGAACAACAATCCCCTCCCAATCCCTAAACGACGCCGTTCTCTGCGAAGAAGCCTTCACGCGAGTCTTCCACCTCGCCGCACTCCGCGTCCCCTCCTCCGAATGCTCCGCCCTCGAGAGCCGCCTCCGTGGCCACCTCCTTAACTGGCCCCGCCTCCGCAATATCGCCCGCGTCCCCGGCGACGACATCGACCCCACCCTCGCCCCTCTCTTGCCTCAACCAGGTAACGGAGAATTCGACTTCGACGAAAATGAAGTAGAAGAAAGACGTCTCGTCTCGCTGCAACGCCGGATTCACGGCAAGGCGGACGGCGACGGCGACGTGTTGAGCCCCGTGCTGTACCGTGACAGGCTCGCGAGGACGTTCAACACCAGCGGCTTCGTGAAGTTCCGCCACCTCGCGAAGATTTCGCGGCCGAACAGGAATAAGAGGAGGAGGAAGAGGAAGGAGAAGGAGTCGAGTGAAGGGGTTAAGCGCGTGGGGGAGAATGGGTTTGCTGCAGTTGAGGTTATTGAGGAAGAAGAAGAAGGAGAAGAAAGTGGTGGTTTGAGGAATTTGCTTGGAGAAGAGTTTGCGAGGAAAAAATGGAGAGGTTCCACGAGGTTGCTGCTTCTGGATGAACGCTACGCCGATCGCGGTTTCGAGGAGTTGCCTGAGGCAACTAAGGCTGTTTTGAAGGAGTATGCAGAAAAGAGTACAAATTTGATGCTTGAGCTAGTTAGATGCAAGTTGACACTATTCTATGATTACTGGCAGATGAATGAGGTCTTGGAGACCTTGCTGCCTGAGGGTATGATTATTCCTTCCGCTTTTGAGACTGTTGGTCATATAGCACACCTGAATTTGAGAGACGAACATTTACCATACAAGTGGCTAATAGCTAAGGTTGTGCTGGATAAGAATAAGCCAAGGATACAAACGGTTGTGAACAAGATTGATACAATTCAAAATGAGTACAGGACCATGCAGCTTGAGGTTTTAGCAGGAAACCACTCTCTTGTGACTACAGTAGTTGAGAATGGTATTCACTTTCAGGTTGACTTAGCGACAGTATATTGGAGTTCTAGGCTAGGAACTGAAAGACAAAGGCTTCTGAGTGGTTTTACACGGAACGATGTCGTCTGTGATGTTTTCTCTGGAGTTGGTCCTTTAGCCATATCTGCAGCAAGGATAGTTAAACGTGTTTTTGCTAATGACTTAAATCCTTATGCAGTTGAGTATCTGGAAAGAAATTGTGTTCTAAACAAACTTGACAGGAAGATTAAGGTCTTTAACATGGATGGAAGAAGGTTCATTAAATCTATGTATGACAGTGATATATCTCAGTCCATCACACAGGTGGTTATGAACTTGCCAAGTGAAGCTGCAGAATTTCTAGATGCATTTCGGGGAATATACAAAAATAGACCCAAGGATGGGGAATATACTTTGCCATTGATCCATGTTTATGGATTCTCCAAAGCACGAGATCCAGAATTTGATTTTCACGAGAGAATAAGAATTGCACTGCTAGAAGTTGCAGTCAATGTAGACATGAGACGGGTAAGGCTTGTTGCTCCTGGAAAATGGATGTTGTGCGCATCGTTCCTTCTCCCTAAAAGTGTAGCATTTGCTGATACTGCAGTTGATACCTAA
>Glyma13g35870.1 sequence type=predicted peptide gene model=Glyma13g35870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISKVFLKPHLVGLLLPSKFGLVFPHTTKPSSSLPTTFFISHFSSAPLSSYGPSLHKGTTIPSQSLNDAVLCEEAFTRVFHLAALRVPSSECSALESRLRGHLLNWPRLRNIARVPGDDIDPTLAPLLPQPGNGEFDFDENEVEERRLVSLQRRIHGKADGDGDVLSPVLYRDRLARTFNTSGFVKFRHLAKISRPNRNKRRRKRKEKESSEGVKRVGENGFAAVEVIEEEEEGEESGGLRNLLGEEFARKKWRGSTRLLLLDERYADRGFEELPEATKAVLKEYAEKSTNLMLELVRCKLTLFYDYWQMNEVLETLLPEGMIIPSAFETVGHIAHLNLRDEHLPYKWLIAKVVLDKNKPRIQTVVNKIDTIQNEYRTMQLEVLAGNHSLVTTVVENGIHFQVDLATVYWSSRLGTERQRLLSGFTRNDVVCDVFSGVGPLAISAARIVKRVFANDLNPYAVEYLERNCVLNKLDRKIKVFNMDGRRFIKSMYDSDISQSITQVVMNLPSEAAEFLDAFRGIYKNRPKDGEYTLPLIHVYGFSKARDPEFDFHERIRIALLEVAVNVDMRRVRLVAPGKWMLCASFLLPKSVAFADTAVDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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