Glyma13g35810 - SoyBase

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Report for Sequence Feature Glyma13g35810

Feature Type:	gene_model
Chromosome:	Gm13
Start:	37183446
stop:	37185814
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g35810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21440	AT	Annotation by Michelle Graham. TAIR10: MYB-like 102 \| chr4:11418425-11419652 REVERSE LENGTH=350	SoyBase	E_val: 1.00E-89	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_D9ZJ64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ64_MALDO	SoyBase	E_val: 8.00E-90	ISS
UniRef100_UPI0001D83BD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D83BD1 related cluster n=1 Tax=unknown RepID=UPI0001D83BD1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g35810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35810 not represented in the dataset	Glyma13g35810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g35810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g282100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g35810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g35810

Limit To All Plant Sequences

>Glyma13g35810.2   sequence type=CDS   gene model=Glyma13g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAGTCTTCTACTGAAAAGAATGGACTGAAGAAGGGTCCATGGACTCCAGAGGAAGATCAGAAACTCATCGATTACATTCAGAAACATGGACATGGGAAGTGGAGAACCCTTCCCAAAAATGCAGGACTAAAAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCTAACTACTTGAGGCCCGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACTCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCAGTGACTCACACACCTCGCCTTGATGTTATTCAACTTGCCTCCATTCTCAACACATCTTTATACAATTCAGCACCCCAATTCAACTACCCTTCTCTTTCTGGAATTGGAAGATCAGTGATAAACCCAAGCCATATGCTAGGTTTGCTCACTACCCTGCTATCATGTCAAAACAGAAATTACAACCCTGATGTATTGAATAATAACCAACTTAGTGGTGGTAGCACTCTACTGCAAAATCAACACCAATGTTCCCGAATGCAACTTGATTCTACACAAGCCTTCCAACCAAACCAACCACAAGTCTCACTACAAGAAAACCACATTGCTAAGTCTAATTCTAATCCATTGAATATGGAACCCCAAGTTATGAAAACTACATTAGAGAATCAAATCACTCCAATTGCTACCCCTTTTAGCCAACAAAACACACTACCAAATTTGTGGCACTATAATACTGAAGGTCACATATCTGATCTACCAACAATGGCTCAATCATCATCAGCTATGCAATGTTTCTCTTCTCCCAAGTTCAATTCTATATACAACAATCTCTTGGAAAATCAGAATTTGTGTAACAACAACGAGGGGATGCCAAATTTCAATCTAAGTTCACTGTTATCGTCCACACCCTCATCTTCTAGCCCAATTAGTACTTTGAATTCGTCATCTTCCACAACATTTGTCAACGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAGCATGTTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA

Predicted protein sequences of Glyma13g35810

Limit To All Plant Sequences

>Glyma13g35810.2   sequence type=predicted peptide   gene model=Glyma13g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKSSTEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVIQLASILNTSLYNSAPQFNYPSLSGIGRSVINPSHMLGLLTTLLSCQNRNYNPDVLNNNQLSGGSTLLQNQHQCSRMQLDSTQAFQPNQPQVSLQENHIAKSNSNPLNMEPQVMKTTLENQITPIATPFSQQNTLPNLWHYNTEGHISDLPTMAQSSSAMQCFSSPKFNSIYNNLLENQNLCNNNEGMPNFNLSSLLSSTPSSSSPISTLNSSSSTTFVNGTTEDERDTYGSSMLMYNISNGLNDSGLL*

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