SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54310 | AT | Annotation by Michelle Graham. TAIR10: ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483 | SoyBase | E_val: 3.00E-166 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0010227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ abscission | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0703 | KOG | Predicted GTPase-activating protein | JGI | ISS | |
| PTHR23180 | Panther | CENTAURIN/ARF | JGI | ISS | |
| PTHR23180:SF31 | Panther | ARF-LIKE | JGI | ISS | |
| PF01412 | PFAM | Putative GTPase activating protein for Arf | JGI | ISS | |
| UniRef100_G7IR44 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein n=4 Tax=Medicago truncatula RepID=G7IR44_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M3D5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M3D5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g35740 not represented in the dataset |
Glyma13g35740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g34840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g281400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g35740.1 sequence type=CDS gene model=Glyma13g35740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAGCAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATTGTTTCTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGATGAAAAGAGATGGGTTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTTCGGGAAGAGAAAAGTCCTTCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTTATGCCGCTGTTTCTGAAAATAAATTTGAGGAAAGGAAGAAAATCCAACCATCAACTGCAATTCCTGCCGCAAGAATTAATGTTCCTGCTCCTCCCAGAGCACCTGAGCAGGTAACTCCTATTACCAAACCTCAGCATGTGGAGAAAGTGGAATCAGTAGCACCACAACCACAAGCTCCCCAACCACTAGCTGAAACATCAAAGCAGGCTACAGACACAGTTAAAAATAACCCTCCTAAAGTTGACTATGCCACAGACCTTTTCAACATGTTGTCTATGGATGGCCCCAATGAAAATGGCTCTGAGGCAGCTGGTACAACTACTGATGATAATCACTGGGCAGGTTTCCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCCCTGAAAGCAGCTGATAGTACTCCAGGTTCTGCATCTGGAATTGAGGATCTTTTCAAAGATTTACATCCTGTGACACCAAGTTTGACTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGCTAGCACAGCAACAGTCTCTTCTAATGGCTTCTGCAGCTAAATCTTCTGGTGGGGATCCTAGGTATCCTGCTAGCATACAACAACCTAGACCCAATGTTCCTATCCAAAGTTGGCCAGCTACTGGCTATTCAATTCCTGGAGTAATGCCCATGGGTGGTCAGGGAGAGTTGCAAAAACTTGTGCAGGGTCAGACTAGGAACATGACCCCAGCACATTTTGCAGGGAGTTCTGTTCAATATCCACCATCCAGTTTCTATGGTATGGGACAAGTTCCTCCTCCAGTTAACGGTATGACAATGGGAGTGAGTAAACCTCAGTCAGGAGCTCCTGCAGTGTCATCTACCACTTCACAGTCTGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGAATGTTTATGAAACAGTGA
>Glyma13g35740.1 sequence type=predicted peptide gene model=Glyma13g35740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANCFWEAELPPNYDRVGIENFIRAKYDEKRWVPRDGNSKTPSGFREEKSPSHWQRPVERSGYAAVSENKFEERKKIQPSTAIPAARINVPAPPRAPEQVTPITKPQHVEKVESVAPQPQAPQPLAETSKQATDTVKNNPPKVDYATDLFNMLSMDGPNENGSEAAGTTTDDNHWAGFQSAAEVSTAEKTSPLKAADSTPGSASGIEDLFKDLHPVTPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMASAAKSSGGDPRYPASIQQPRPNVPIQSWPATGYSIPGVMPMGGQGELQKLVQGQTRNMTPAHFAGSSVQYPPSSFYGMGQVPPPVNGMTMGVSKPQSGAPAVSSTTSQSAKDYDFSSLTQGMFMKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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