Report for Sequence Feature Glyma13g35720
Feature Type: gene_model
Chromosome: Gm13
Start: 37107682
stop: 37108995
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g35720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G54370 AT
Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) protein-related | chr5:22075334-22076567 FORWARD LENGTH=337
SoyBase E_val: 4.00E-161 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF06830 PFAM
Root cap
JGI ISS
UniRef100_B9T644 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of cell wall, putative n=1 Tax=Ricinus communis RepID=B9T644_RICCO
SoyBase E_val: 7.00E-164 ISS
UniRef100_UPI000233BBF9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BBF9 related cluster n=1 Tax=unknown RepID=UPI000233BBF9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g35720
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g35720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g281200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g35720
Coding sequences of Glyma13g35720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g35720.1 sequence type=CDS gene model=Glyma13g35720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTCACCAAAACAAGTTCCCTCCTAATATTCTTGCTAGTGTTTGTCTCAAGCTTGATCCATGCTAAGGCATACCAAAATCTATACTGTGGCAGAGGAACCAGATGCTATGGAAAGTACATCACATGTCCTGCTGAGTGCCCTAACAGTGAAACAAACAATCCTAAGACTAAGGTTTGCCAAATCGAGTGCAACAAACCTACTTGCAAGGCAGTCGCAATTAGGTCGGCAAGGCCAAACTGCAATGCACCAGGATCAGGATGCTATGATCCCCGTTTCATTGGTGGAGATGGTAGAGTCTTCTACTTCCACGGAAAGACCAACGAACACTTCTCCTTAGTCTCCGATTCCAACCTTCAAATCAATGCACGCTTCATTGGACACAGGCCTGAAGGAAGAAGCCGTGACTACACATGGATCCAAGCCCTTGGAATCCTCTTCAACTCCAAAAGCTTCTCACTTGAGGCCACCAAGACACCCCAGTGGAATGATGAACTTGACCACTTCAAATTCACCTACAATGAGAACCAAGTAGCCCTAGCTGAAGGCTCTCTCTCCACTTGGCACAGTGAAGAAAAAGATATAAAGGTGGAGAGAGTGGCAAGCAAGAACAGTGTGATGGTTACAGTGAAGGATGTGGCTGAAATATTGGTGAATGTTGTGCCAATAACCAAAGAGGATGACAGAATTCACAACTACCAAGTGCCTTCTGATGACTGTTTTGCTCACTTGGAAGTTCAGTTCAGATTCTTTGCTTTGTCCCAAAAAGTTGATGGTGTACTTGGAAGGACTTATAGGTTGGATTTTGAGAACCCAGCAAAGCCTGGTGTGGCTATGCCTGTTGTTGGAGGAGAAGACAAGTACAGGACTAACTCATTGCTCTCTCCTGATTGTGTTTCTTGTGTGTTCTCACAGGAAAGTTCTGCTGAGAAAGAGACCATGGAATATGGCACCCTTGATTGCACCAAGTTTTCAAATGGGTTGGGAATCGTTTGCAGGAAGTGA
Predicted protein sequences of Glyma13g35720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g35720.1 sequence type=predicted peptide gene model=Glyma13g35720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFTKTSSLLIFLLVFVSSLIHAKAYQNLYCGRGTRCYGKYITCPAECPNSETNNPKTKVCQIECNKPTCKAVAIRSARPNCNAPGSGCYDPRFIGGDGRVFYFHGKTNEHFSLVSDSNLQINARFIGHRPEGRSRDYTWIQALGILFNSKSFSLEATKTPQWNDELDHFKFTYNENQVALAEGSLSTWHSEEKDIKVERVASKNSVMVTVKDVAEILVNVVPITKEDDRIHNYQVPSDDCFAHLEVQFRFFALSQKVDGVLGRTYRLDFENPAKPGVAMPVVGGEDKYRTNSLLSPDCVSCVFSQESSAEKETMEYGTLDCTKFSNGLGIVCRK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
