SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54440 | AT | Annotation by Michelle Graham. TAIR10: CLUB | chr5:22100056-22107695 FORWARD LENGTH=1259 | SoyBase | E_val: 0 | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0000919 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell plate assembly | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1931 | KOG | Putative transmembrane protein | JGI | ISS | |
| PTHR13251 | Panther | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 | JGI | ISS | |
| PTHR13251:SF3 | Panther | EPILEPSY HOLOPROSENCEPHALY CANDIDATE-1 PROTEIN-RELATED | JGI | ISS | |
| PF11817 | PFAM | Foie gras liver health family 1 | JGI | ISS | |
| PF12584 | PFAM | Protein of unknown function (DUF3758) | JGI | ISS | |
| UniRef100_F4K0C4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein CLUB n=1 Tax=Arabidopsis thaliana RepID=F4K0C4_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C8C5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C8C5 related cluster n=1 Tax=unknown RepID=UPI000233C8C5 | SoyBase | E_val: 0 | ISS |
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Glyma13g35636 not represented in the dataset |
Glyma13g35636 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g34936 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g280700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g35636.1 sequence type=CDS gene model=Glyma13g35636 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAACTTCCTCGCTCAGTTCCAGACTATTAAGAACACCTCGGATCGCCTTGTCATTTCAGTGGAGGATGTGAGTGACCTGTGGCCAACTGTCAAGCCTGCTTTTGAGGGGCGTTTGCCGTTCAAACGGGCGACTTTGAATAACAAGACGCGGAACCCTGTATTTGTTGACACATTGCCGGCCGAGTTCATATTAACCACCGATTCAAGACTCCGTAGCCGGTTCCCTCAGGAGCAATTTTTATTTTGGTTTCGAGAGCCGTATGTGACTGTTGTACTTGTCACCTGTGAGGATCTGGATGAGTTTAAAACCATCCTTAAACCACGCTTGAAATTAATTATCCAAAATGATGAAAAGGAGTGGTTCATTGTATTTGTATCTAAAGCTCATCCAGCTAATGATCAGGCAAGCAAAATGGCAAAGAAAGTATATGCTAAACTTGAAGTTGAGTTTAACACCAAAAAAAGAGAAAGATGCTGCAAATATGATATGCATTTCCCTGAAGCAAACTTTTGGGAGGATCTAGAATCAAAGATAATGGAATGCATCAGAAATACCCTGGATAGGCGTGTACAATTTTATGAGGATGAGATACGAAAGCTCAGTGAACAGCGCCTCATGCCAGTCTGGAACTTCTGCAACTTTTTCATTCTTAAGGAAAGCTTGGCTTTTATGTTTGAAATGGCTCACCTTCATGAAGATGCCTTACGGGAATATGATGAACTAGAACTCTGCTATCTTGAAACAGTTAACATGACTGGAAAGCAGAGAGACTTTGGAGGGGCAGATCATGGTGACGATCAAGCAGCATTGGTTAATCCAGGAAATAAAGCATTGACACAGATTGTTCAAGAGGACTCATTTCAGGAGTTTGAATTCAGACAGTATCTATTTGCCTGTCAGTCAAAGCTCTTATTCAAGTTAAATCGTCCCATTGAGGCTGCGTCACGTGGCTATTCATTCATAATAAGCTTCTCCAAATCCTTGGCATTGCATGAGCGTATTCTGCCTTTTTGTATGCGTGAAGTCTGGGTAACAACTGCTTGCTTGGCTTTAATTGAAGCAACCACTTCTAATTATAATGATGGACATGTGGCGCCTGACGTAGAGAAGGAGTTCTTTCGTCTTCTGGGTGACCTATATTCTCTAGCTAGAGTTAAGTTCATGAGGCTTGCCTATTTAATTGGATATGGAACTGATATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCCTAAGCCAGCTGTCTGGCCTTCAGTTCCTGCTGACACATCAACAGAGGTGCTTGAGAAAGAAAAGCTGATTCTACAAACAACTTCTAGAACCAAGCACTTTGGTATCCAGAGGAAACCCCTGCCTCTTGAACCTACTGTTCTTCTACGAGAGGCCAACAGGCGGAGGGCTTCACTTTCAGCTGGAAATGTGTCTGAAATATTTGACAGTCGCCAGGGTCCAATGGATGGATCAGGTTTTGATGCATCCACTAGAATGTCACCACAAAAAGCACTTGCAAGTTCCATGTCACGTACAAATTCTTCACCAGGAAACTTTGATAGCTCAATTGACCGACCAATGAGGCTTGCTGAGATTTTTGTTGCTGCTGAGCATGCTTTGAAGCAAACAATTTCTAATCCAGAACTGGGGAAATCATTATCATCATCCGAGGAGTTTGAGCAAAAATATTTAGAGCTAACTAAAGGTGCTGCTGACAATTATCATCGTTCCTGGTGGAAAAGACATGGTGTTGTCCTTGATGGTGAGATAGCAGCTGTGGATTTTAAGCATGGATGTTTTGATCAAGCGGCAAAGTCATATGAGAAGGTTTGTGCACTGTATGCTGGTGAAGGATGGCAGGATTTGTTGGCTGAGGTCCTTCCCAATTTAGCTGAGTGTCAGAAGAGTCTTAATGATCAAGCTGGCTACTTATTATCTTGTGTGAGGTTACTTTCTCTTGATGAAGGATTATTTTTGACCAAGGAGCGCCAAGCCTTTCAGTCAGAAGTTGTTCGTCTTGCTCATAGCGAAATGAAGGACCCTGTACCTCTTGATGTATCATCATTAGTTACATTTTCTGGAAATCCTGGGCCTCCATTGGAGTTATGTGATAGGGATCCTGGCATCCTTTCTGTAACCGTATGGAGTGGTTTTCCAGATGATATAACTCTCGATTCAATCAGTCTTACATTAAATGCAACATATAATACCGATGAAGGTGTAAAGGCATTGAAGAGTTCTACAGCCATTGTGTTACACCCTGGTCGGAATACTATTACCTTGAATCTACCACCTCAGAAACCAGGATCTTATGTTCTCGGAGTTCTTACTGGGCAGATTGGGCATTTGAGGTTTAGATCTCATAGTTTTTCAAAAGTTGGTCCCGCTGATAGTGATGATTTTATGAGTTATGAAAAGCCAGCTAAACCCATTCTGAAGGTTTTCAAACCTAGAGCCCTTGTTGATCTTGATGCTGCTGTTTCATCTGCTTTGTTGATAAATGAAGACCAATGGGTTGGCATTTTAGTTCGACCTGTAAATTACTCGCTCAAAGCTGCTGTCTTGCATATTGATACTGGTCCAGGGTTGGAGATTAAAGAGTTGCATGTAATTGAGATGGAAACCGATGCTGCTGGTGTATCTCGGGGTGATGATGACCAGGTGCAGAATGATGGTGCTCAGATAAGAACTCTAAATTCTGATAAAAAATTTGAATGTTTGACTCTTCATGATGGTAAAATAGAATTTCCAAATTGGGCAAGTGACACTCCTTCTATTCTTTGGGTTCTGGTTCGTGCCATCAGTGACACGCTCAGCAGAGGATCTTCTTCAGCCACAACAAGGAGAGAAAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTGCATTTTACGTATCCTTTCTATGTGAGGACACGTGTTACTGATAAATGCAATGATGGTACCCTGCTTCTGCAGGTAATACTTCACTCTGAAGTAAAGGCTACATTGACCATTTATGATGCCTGGCTTGATCTTCAAGATGGATTTGTTCATACTGGACAAACTGAGGGTAGACCTAATTCAAGTTTCTTCCCGCTAAACATATCTCCCACTTCCAAAGGAGGAATATTGTTTAGTATCTGCCTAGACAACACAAATGCAGAAGAAGCCAGGAAGCAATCAGAAAGCATATTAAATGTCAAATATGGAATTTCTGGCGATAGAACAATTGGAGCTCACCCTCCTGTCATGAATGAATCTACTGGAGTTGATGGTGCCAGACAAGAGTTAATCTTCAGGAGTGCAATTACTTTGCAAAGGCCTGTGCTTGATCCATGCCTAGCTGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTAAGAGTAGGACAACTAGTTAAGATGCAATGGAGAGTGGAAAGGTTAAAGGATTTAGATGAGGAAGGAGTTTCTAAACAGAATGATGAGATGCTATACGAGGTAAATGCAAATTCTGGAAATTGGATGATAGCCGGGAGGAAAAGAGGATATGCATCTCTGTCCACAAAACAAGGGGCAAGAATAGTTATCTCGGTACTATGCATGCCACTGGTGGCTGGTTATGTTCACCCTCCCGTACTTGGGCTGCCAGATGTTGATGAGGCAAATATAAGCTGCAAACCTGCTGGGCCACATCTGGTTTGTGTTTTGCCACCGCCTCTCAGCTCCTCCTTCTGCATTCCAGTTAATTCATGA
>Glyma13g35636.1 sequence type=predicted peptide gene model=Glyma13g35636 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANFLAQFQTIKNTSDRLVISVEDVSDLWPTVKPAFEGRLPFKRATLNNKTRNPVFVDTLPAEFILTTDSRLRSRFPQEQFLFWFREPYVTVVLVTCEDLDEFKTILKPRLKLIIQNDEKEWFIVFVSKAHPANDQASKMAKKVYAKLEVEFNTKKRERCCKYDMHFPEANFWEDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMTGKQRDFGGADHGDDQAALVNPGNKALTQIVQEDSFQEFEFRQYLFACQSKLLFKLNRPIEAASRGYSFIISFSKSLALHERILPFCMREVWVTTACLALIEATTSNYNDGHVAPDVEKEFFRLLGDLYSLARVKFMRLAYLIGYGTDIERSPVNSASLSLLPWPKPAVWPSVPADTSTEVLEKEKLILQTTSRTKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVSEIFDSRQGPMDGSGFDASTRMSPQKALASSMSRTNSSPGNFDSSIDRPMRLAEIFVAAEHALKQTISNPELGKSLSSSEEFEQKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVDFKHGCFDQAAKSYEKVCALYAGEGWQDLLAEVLPNLAECQKSLNDQAGYLLSCVRLLSLDEGLFLTKERQAFQSEVVRLAHSEMKDPVPLDVSSLVTFSGNPGPPLELCDRDPGILSVTVWSGFPDDITLDSISLTLNATYNTDEGVKALKSSTAIVLHPGRNTITLNLPPQKPGSYVLGVLTGQIGHLRFRSHSFSKVGPADSDDFMSYEKPAKPILKVFKPRALVDLDAAVSSALLINEDQWVGILVRPVNYSLKAAVLHIDTGPGLEIKELHVIEMETDAAGVSRGDDDQVQNDGAQIRTLNSDKKFECLTLHDGKIEFPNWASDTPSILWVLVRAISDTLSRGSSSATTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTYPFYVRTRVTDKCNDGTLLLQVILHSEVKATLTIYDAWLDLQDGFVHTGQTEGRPNSSFFPLNISPTSKGGILFSICLDNTNAEEARKQSESILNVKYGISGDRTIGAHPPVMNESTGVDGARQELIFRSAITLQRPVLDPCLAVGFLPLPSDGLRVGQLVKMQWRVERLKDLDEEGVSKQNDEMLYEVNANSGNWMIAGRKRGYASLSTKQGARIVISVLCMPLVAGYVHPPVLGLPDVDEANISCKPAGPHLVCVLPPPLSSSFCIPVNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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