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Report for Sequence Feature Glyma13g35510

Feature Type:gene_model
Chromosome:Gm13
Start:36937699
stop:36940068
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g35510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27435AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1218) | chr4:13723903-13724872 FORWARD LENGTH=173 SoyBaseE_val: 2.00E-90ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06749PFAM Protein of unknown function (DUF1218) JGI ISS
UniRef100_C6SW14UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW14_SOYBN SoyBaseE_val: 7.00E-131ISS
UniRef100_Q6T7D3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fiber protein Fb34 n=1 Tax=Gossypium barbadense RepID=Q6T7D3_GOSBA SoyBaseE_val: 1.00E-101ISS

Expression Patterns of Glyma13g35510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35510 not represented in the dataset
Glyma13g35510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g35510
ParalogEvidenceComments
Glyma12g35030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g35510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g279500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g35510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g35510
>Glyma13g35510.1   sequence type=CDS   gene model=Glyma13g35510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCTTTTACTCATCACTGTCTTCGTTTTTGATTTGATTGCTTTTGGACTTGCCGTGGCTGCTGAGCAGAGAAGAAGCACCGCTAGTGTTGTGACGGACAATGAAAAGAATTATAATTACTGTGTCTATAACTCTGATATAGCAACTGGCTATGGTGTTGGAGCATTTTTGTTTCTCTTGGTTAGTCAAGTCCTGATAATGGTGGCAAGTCGATGCTTCTGTTGCGGGAAGCCTCTTAACCCTGGAGGCTCAAGGGCCTGTGCAGTTGTTCTTTTCATAATCTGCTGGGTGTTTTTCATCATAGCTGAGGTGTGCTTGTTGGCTGGATCAGTGGAAAATGCCTATCACACCAAGTACAGGACCATCTTCGGGGAGAATCCTCCGTCTTGCGAAACAGTTAGGAAGGGAGTCTTTGCTGCCGGTGCTGCTTTTGTTTTCTTCACTGCCATAATCTCTGAATTCTACTATATCAACTACTCAAGGGCAAGGGAAAGCTTCCAACCTTATGCTGGCGGCGAGACTGGTGTCGGTATGGGAACCTACAAATGA
Predicted protein sequences of Glyma13g35510
>Glyma13g35510.1   sequence type=predicted peptide   gene model=Glyma13g35510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLLLITVFVFDLIAFGLAVAAEQRRSTASVVTDNEKNYNYCVYNSDIATGYGVGAFLFLLVSQVLIMVASRCFCCGKPLNPGGSRACAVVLFIICWVFFIIAEVCLLAGSVENAYHTKYRTIFGENPPSCETVRKGVFAAGAAFVFFTAIISEFYYINYSRARESFQPYAGGETGVGMGTYK*






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