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Report for Sequence Feature Glyma13g35451

Feature Type:gene_model
Chromosome:Gm13
Start:36858250
stop:36860828
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g35451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15420AT Annotation by Michelle Graham. TAIR10: Transcription factor TFIIIC, tau55-related protein | chr3:5207704-5208289 REVERSE LENGTH=107 SoyBaseE_val: 2.00E-25ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF10419PFAM TFIIIC subunit JGI ISS
UniRef100_E0CSN1UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=E0CSN1_VITVI SoyBaseE_val: 1.00E-42ISS
UniRef100_Q00RJ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0155K17.8 protein n=1 Tax=Oryza sativa RepID=Q00RJ2_ORYSA SoyBaseE_val: 1.00E-11ISS

Expression Patterns of Glyma13g35451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35451 not represented in the dataset
Glyma13g35451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g35451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma13g35451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g35451
>Glyma13g35451.1   sequence type=CDS   gene model=Glyma13g35451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAAATGCAGCTTCACACGATCATGAGGATCAAGATGAATATGTTTTGCTTAACTTGGATGGTGTTTCTGACCTAATTGACATTCCACCAAATGCAAAGTATGTTCTTACTGGCCTTGATACATTAAACCCAGTACTGATCATTGATGACAAATTCAAGCTGATTGGAGAATATGAGGAGACAATTGGCACATGCATTGCTTTTACAGAACAAGAAGCCGCTGTGGTTCATGAAGAGACTGGACCATCTGAAGTGAACATTTTCTCCGGAACAAGACTAATTGATTCAAGTCAAGCTCCAACAACGCAAGTGAAACCTGTGTGTCAGCTTCACAAGGTTCTCAAGTTTAAACTATCACCTGATTCTGAAATTCAGAACATTTTGAAGGAGGGTTGGATTTTTGTCACGGGTTTGTACAGATTACAAAGGCCAGAAAGTAGACATGTAGACATGGCAATGGGACGGGTTGGGTACGGATATTGTCTCCCCAATCCCTTATCCCCACTCCTCAACATATCCCCATATGTGTACCCCATATCTGTACCTGATACCCGACAGGTTTGA
Predicted protein sequences of Glyma13g35451
>Glyma13g35451.1   sequence type=predicted peptide   gene model=Glyma13g35451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEANAASHDHEDQDEYVLLNLDGVSDLIDIPPNAKYVLTGLDTLNPVLIIDDKFKLIGEYEETIGTCIAFTEQEAAVVHEETGPSEVNIFSGTRLIDSSQAPTTQVKPVCQLHKVLKFKLSPDSEIQNILKEGWIFVTGLYRLQRPESRHVDMAMGRVGYGYCLPNPLSPLLNISPYVYPISVPDTRQV*






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