Glyma13g35410 - SoyBase

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Report for Sequence Feature Glyma13g35410

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36829873
stop:	36835932
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g35410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61810	AT	Annotation by Michelle Graham. TAIR10: beta-glucosidase 45 \| chr1:22830035-22832813 FORWARD LENGTH=520	SoyBase	E_val: 1.00E-147	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0008422	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-glucosidase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
GO:0047782	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coniferin beta-glucosidase activity	SoyBase	N/A	ISS
KOG0626	KOG	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins	JGI		ISS
PTHR10353	Panther	GLYCOSIDE HYDROLASES	JGI		ISS
PF00232	PFAM	Glycosyl hydrolase family 1	JGI		ISS
UniRef100_Q7XSK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucosidase 18 n=4 Tax=Oryza sativa RepID=BGL18_ORYSJ	SoyBase	E_val: 7.00E-162	ISS
UniRef100_UPI000233BA9C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BA9C related cluster n=1 Tax=unknown RepID=UPI000233BA9C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g35410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35410 not represented in the dataset	Glyma13g35410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g35410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g278600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g35410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g35410

Limit To All Plant Sequences

>Glyma13g35410.3   sequence type=transcript   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACAGCAACGTTGCAGAATTTACAACCAATTAACCTAAAATCTAGCACTCATGACATGAGACAGGTCTCATGTTGATAAGCTTTGAAACGTACGTTTTTGTTGCATAATGAGTGTCATCACTAATCCATAATCATACCAACAAAATGAAAATGCTGCTGAGGCAGCCAAGTGTTGTGATGGCACTGCTTTGTTGTGTTCATTTTCATGTCCAATGTTGTGATGAAGTTGAAGAAGGAATCATCAGATCTCACTTCCCTCAAGGATTCCTCTTCGGAACGAGTACTTCCTCTTACCAAATTGAAGGAGCACCATTTGAAGATGGTAGCGGTACAAGCAACTGGGATGTTTTTTGTCATACACCAGGAAAGATAAACAATGATGAGAATGGTGACATTGCAGATGATCATTATCATCGCTATTTGGAAGACATTGAGTTGATGTCGTCTCTTGGGGTAAATGTATATCGATTCTCTATCTCATGGACGAGGATTCTACCAAGAGGGATATACGGGAACATCAATCCAAGTGGGATAATGTTCTACAACAAGATTATAGACAATCTGCTGCTTAGAGGGATTGAGCCATTTGTGACAATTCATCATCATGACATGCCACAAGAACTAGAAGAAATATATGGTGGTTGGATTAGTCCCCTAATACAGAGAGATTTTGTTCATTTTGCTGAAATTTGTTTTAAGAGCTTCGGAGACAGGGTTAAGTATTGGACTACCATCAATGAGCCAAACCAATTTTCAGACTTTGCTTATATGAGAGGAATATATCCCCCTGGTCGCTGTTCCCCACCTTTTGGAAATTGTAAAACTGGTAACTCTGATGTTGAGCCTCTCATTGCCTTGCACAATATGTTACTGTCACATGCCAAGGCTGTTGACTTATACCGCAAGCACTTTCAGGTAACAATAAAATGTCCTAAACTAGCATTTGTTGTCACATTTGCTAGGTTAGGGGAAACAGGACTAAAGGCCAATATTGGAGTTTAAATAGTAAACCATTCATGCTAATCCAGGCAAAGCAAGGTGGAACCATCGGCATTGTTGCAGACTCCCTCATGTTTGAACCACTTAGAGATGAAGAATGTGATAGACAAGCTGCGAGTAGGGCCTTGACTTTTGAGCTAGCCCGGTAAGTTGATACAAAATCAATGGAAAAATGTCAAGTTTTGCACATGACAATCATATCTATACAAACTATTATAAACATTATTATTATTGAAGAGAATTAGCACACATGATCCTTTGTTTTTATTTCTTAAAAAACTTTTACTTCTCTGTTGGTGACAAAAAGGGTCTTAGATCCCCTGGTTTTCGGTGAGTACCCAGCTGAAATGCGCTCAATCCTTGGTAGTAAGTTGCCAGTGTTCTCTCCTAAGGAGAAGAGTCTCATAAAAGGCAGCCTAGACTTCATTGGCATCAATCACTATGGAACTCTCTATGCCAAAGACTGCACCCTCTCTACTTGTTCTCTTGGAGCAGATCATCCAATAAGAGGTTTTGTAGAAACAACTGCAACAAGAAATGGTGTTCCAATTGGTGAACCGGTACCTTTATGTCCTCCCGCTTCTGTTTTCATTATGTTATGTTGTTTACTCAAATATTTGATAAAGAAATTGGTATTCAACAAAATCTGTGATATAATTTCTTTTTGTTTTAAGCAGACAGGAATAGCACAGTTTTTTGTTGTTCCAAGGGGCGTGGAGAAGCTTGCAGACTACATTAAAATGAGATACCATAATATACCCATGTATATTACAGAAAATGGTGTGTAAATATTGATTAGACGAGGACAAACATTTTTTTTATTCATC

>Glyma13g35410.4   sequence type=transcript   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGAAACGTACGTTTTTGTTGCATAATGAGTGTCATCACTAATCCATAATCATACCAACAAAATGAAAATGCTGCTGAGGCAGCCAAGTGTTGTGATGGCACTGCTTTGTTGTGTTCATTTTCATGTCCAATGTTGTGATGAAGTTGAAGAAGGAATCATCAGATCTCACTTCCCTCAAGGATTCCTCTTCGGAACGAATTGAAGGAGCACCATTTGAAGATGGTAGCGGTACAAGCAACTGGGATGTTTTTTGTCATACACCAGGAAAGATAAACAATGATGAGAATGGTGACATTGCAGATGATCATTATCATCGCTATTTGGAAGACATTGAGTTGATGTCGTCTCTTGGGGTAAATGTATATCGATTCTCTATCTCATGGACGAGGATTCTACCAAGAGGGATATACGGGAACATCAATCCAAGTGGGATAATGTTCTACAACAAGATTATAGACAATCTGCTGCTTAGAGGGATTGAGCCATTTGTGACAATTCATCATCATGACATGCCACAAGAACTAGAAGAAATATATGGTGGTTGGATTAGTCCCCTAATACAGAGAGATTTTGTTCATTTTGCTGAAATTTGTTTTAAGAGCTTCGGAGACAGGGTTAAGTATTGGACTACCATCAATGAGCCAAACCAATTTTCAGACTTTGCTTATATGAGAGGAATATATCCCCCTGGTCGCTGTTCCCCACCTTTTGGAAATTGTAAAACTGGTAACTCTGATGTTGAGCCTCTCATTGCCTTGCACAATATGTTACTGTCACATGCCAAGGCTGTTGACTTATACCGCAAGCACTTTCAGGTAACAATAAAATGTCCTAAACTAGCATTTGTTGTCACATTTGCTAGGTTAGGGGAAACAGGACTAAAGGCCAATATTGGAGTTTAAATAGTAAACCATTCATGCTAATCCAGGCAAAGCAAGGTGGAACCATCGGCATTGTTGCAGACTCCCTCATGTTTGAACCACTTAGAGATGAAGAATGTGATAGACAAGCTGCGAGTAGGGCCTTGACTTTTGAGCTAGCCCGGTAAGTTGATACAAAATCAATGGAAAAATGTCAAGTTTTGCACATGACAATCATATCTATACAAACTATTATAAACATTATTATTATTGAAGAGAATTAGCACACATGATCCTTTGTTTTTATTTCTTAAAAAACTTTTACTTCTCTGTTGGTGACAAAAAGGGTCTTAGATCCCCTGGTTTTCGGTGAGTACCCAGCTGAAATGCGCTCAATCCTTGGTAGTAAGTTGCCAGTGTTCTCTCCTAAGGAGAAGAGTCTCATAAAAGGCAGCCTAGACTTCATTGGCATCAATCACTATGGAACTCTCTATGCCAAAGACTGCACCCTCTCTACTTGTTCTCTTGGAGCAGATCATCCAATAAGAGGTTTTGTAGAAACAACTGCAACAAGAAATGGTGTTCCAATTGGTGAACCGGTACCTTTATGTCCTCCCGCTTCTGTTTTCATTATGTTATGTTGTTTACTCAAATATTTGATAAAGAAATTGGTATTCAACAAAATCTGTGATATAATTTCTTTTTGTTTTAAGCAGACAGGAATAGCACAGTTTTTTGTTGTTCCAAGGGGCGTGGAGAAGCTTGCAGACTACATTAAAATGAGATACCATAATATACCCATGTATATTACAGAAAATGGTGTGTAAATATTGATTAGACGAGGACAAACATTTTTTTTATTCATC

Coding sequences of Glyma13g35410

Limit To All Plant Sequences

>Glyma13g35410.2   sequence type=CDS   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTAACCACTATCCTTGACATTCGACAGGAAGACATTGAGTTGATGTCGTCTCTTGGGGTAAATGTATATCGATTCTCTATCTCATGGACGAGGATTCTACCAAGAGGGATATACGGGAACATCAATCCAAGTGGGATAATGTTCTACAACAAGATTATAGACAATCTGCTGCTTAGAGGGATTGAGCCATTTGTGACAATTCATCATCATGACATGCCACAAGAACTAGAAGAAATATATGGTGGTTGGATTAGTCCCCTAATACAGAGAGATTTTGTTCATTTTGCTGAAATTTGTTTTAAGAGCTTCGGAGACAGGGTTAAGTATTGGACTACCATCAATGAGCCAAACCAATTTTCAGACTTTGCTTATATGAGAGGAATATATCCCCCTGGTCGCTGTTCCCCACCTTTTGGAAATTGTAAAACTGGTAACTCTGATGTTGAGCCTCTCATTGCCTTGCACAATATGTTACTGTCACATGCCAAGGCTGTTGACTTATACCGCAAGCACTTTCAGGTTAGGGGAAACAGGACTAAAGGCCAATATTGGAGTTTAAATAGTAAACCATTCATGCTAATCCAGGCAAAGCAAGGTGGAACCATCGGCATTGTTGCAGACTCCCTCATGTTTGAACCACTTAGAGATGAAGAATGTGATAGACAAGCTGCGAGTAGGGCCTTGACTTTTGAGCTAGCCCGGGTCTTAGATCCCCTGGTTTTCGGTGAGTACCCAGCTGAAATGCGCTCAATCCTTGGTAGTAAGTTGCCAGTGTTCTCTCCTAAGGAGAAGAGTCTCATAAAAGGCAGCCTAGACTTCATTGGCATCAATCACTATGGAACTCTCTATGCCAAAGACTGCACCCTCTCTACTTGTTCTCTTGGAGCAGATCATCCAATAAGAGGTTTTGTAGAAACAACTGCAACAAGAAATGGTGTTCCAATTGGTGAACCGCAGACAGGAATAGCACAGTTTTTTGTTGTTCCAAGGGGCGTGGAGAAGCTTGCAGACTACATTAAAATGAGATACCATAATATACCCATGTATATTACAGAAAATGGATACTCTCCACCGCCGAAGCCGGATGTGACAATACATGATTCACTACAGGATTTCAAACGAATAGATTATCATAAAGCCTACCTTGCAGCTTTGCTTAGATCCATAAGAAAAGGTGCTGATGTAAGGGGATATATGATATGGTCATTGATGGATAACTTTGAATGGGCAAGTGGCTATGACATAAGATTTGGGCTTTATTATGTGGATAGACAGACTCTTGAACGGATTCCCAAACTTTCTGTTCAATGGTTTTCTAGTTTCCTCAACAACACTAGCCACACCAACAAACAAGACCTGAATGATCACTATCATCGCTATTTG

>Glyma13g35410.3   sequence type=CDS   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGCTGCTGAGGCAGCCAAGTGTTGTGATGGCACTGCTTTGTTGTGTTCATTTTCATGTCCAATGTTGTGATGAAGTTGAAGAAGGAATCATCAGATCTCACTTCCCTCAAGGATTCCTCTTCGGAACGAGTACTTCCTCTTACCAAATTGAAGGAGCACCATTTGAAGATGGTAGCGGTACAAGCAACTGGGATGTTTTTTGTCATACACCAGGAAAGATAAACAATGATGAGAATGGTGACATTGCAGATGATCATTATCATCGCTATTTGGAAGACATTGAGTTGATGTCGTCTCTTGGGGTAAATGTATATCGATTCTCTATCTCATGGACGAGGATTCTACCAAGAGGGATATACGGGAACATCAATCCAAGTGGGATAATGTTCTACAACAAGATTATAGACAATCTGCTGCTTAGAGGGATTGAGCCATTTGTGACAATTCATCATCATGACATGCCACAAGAACTAGAAGAAATATATGGTGGTTGGATTAGTCCCCTAATACAGAGAGATTTTGTTCATTTTGCTGAAATTTGTTTTAAGAGCTTCGGAGACAGGGTTAAGTATTGGACTACCATCAATGAGCCAAACCAATTTTCAGACTTTGCTTATATGAGAGGAATATATCCCCCTGGTCGCTGTTCCCCACCTTTTGGAAATTGTAAAACTGGTAACTCTGATGTTGAGCCTCTCATTGCCTTGCACAATATGTTACTGTCACATGCCAAGGCTGTTGACTTATACCGCAAGCACTTTCAGGTAACAATAAAATGTCCTAAACTAGCATTTGTTGTCACATTTGCTAGGTTAGGGGAAACAGGACTAAAGGCCAATATTGGAGTTTAA

>Glyma13g35410.4   sequence type=CDS   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATGTTGTGATGAAGTTGAAGAAGGAATCATCAGATCTCACTTCCCTCAAGGATTCCTCTTCGGAACGAATTGAAGGAGCACCATTTGAAGATGGTAGCGGTACAAGCAACTGGGATGTTTTTTGTCATACACCAGGAAAGATAAACAATGATGAGAATGGTGACATTGCAGATGATCATTATCATCGCTATTTGGAAGACATTGAGTTGATGTCGTCTCTTGGGGTAAATGTATATCGATTCTCTATCTCATGGACGAGGATTCTACCAAGAGGGATATACGGGAACATCAATCCAAGTGGGATAATGTTCTACAACAAGATTATAGACAATCTGCTGCTTAGAGGGATTGAGCCATTTGTGACAATTCATCATCATGACATGCCACAAGAACTAGAAGAAATATATGGTGGTTGGATTAGTCCCCTAATACAGAGAGATTTTGTTCATTTTGCTGAAATTTGTTTTAAGAGCTTCGGAGACAGGGTTAAGTATTGGACTACCATCAATGAGCCAAACCAATTTTCAGACTTTGCTTATATGAGAGGAATATATCCCCCTGGTCGCTGTTCCCCACCTTTTGGAAATTGTAAAACTGGTAACTCTGATGTTGAGCCTCTCATTGCCTTGCACAATATGTTACTGTCACATGCCAAGGCTGTTGACTTATACCGCAAGCACTTTCAGGTAACAATAAAATGTCCTAAACTAGCATTTGTTGTCACATTTGCTAGGTTAGGGGAAACAGGACTAAAGGCCAATATTGGAGTTTAA

Predicted protein sequences of Glyma13g35410

Limit To All Plant Sequences

>Glyma13g35410.2   sequence type=predicted peptide   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLTTILDIRQEDIELMSSLGVNVYRFSISWTRILPRGIYGNINPSGIMFYNKIIDNLLLRGIEPFVTIHHHDMPQELEEIYGGWISPLIQRDFVHFAEICFKSFGDRVKYWTTINEPNQFSDFAYMRGIYPPGRCSPPFGNCKTGNSDVEPLIALHNMLLSHAKAVDLYRKHFQVRGNRTKGQYWSLNSKPFMLIQAKQGGTIGIVADSLMFEPLRDEECDRQAASRALTFELARVLDPLVFGEYPAEMRSILGSKLPVFSPKEKSLIKGSLDFIGINHYGTLYAKDCTLSTCSLGADHPIRGFVETTATRNGVPIGEPQTGIAQFFVVPRGVEKLADYIKMRYHNIPMYITENGYSPPPKPDVTIHDSLQDFKRIDYHKAYLAALLRSIRKGADVRGYMIWSLMDNFEWASGYDIRFGLYYVDRQTLERIPKLSVQWFSSFLNNTSHTNKQDLNDHYHRYL

>Glyma13g35410.3   sequence type=predicted peptide   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMLLRQPSVVMALLCCVHFHVQCCDEVEEGIIRSHFPQGFLFGTSTSSYQIEGAPFEDGSGTSNWDVFCHTPGKINNDENGDIADDHYHRYLEDIELMSSLGVNVYRFSISWTRILPRGIYGNINPSGIMFYNKIIDNLLLRGIEPFVTIHHHDMPQELEEIYGGWISPLIQRDFVHFAEICFKSFGDRVKYWTTINEPNQFSDFAYMRGIYPPGRCSPPFGNCKTGNSDVEPLIALHNMLLSHAKAVDLYRKHFQVTIKCPKLAFVVTFARLGETGLKANIGV*

>Glyma13g35410.4   sequence type=predicted peptide   gene model=Glyma13g35410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNVVMKLKKESSDLTSLKDSSSERIEGAPFEDGSGTSNWDVFCHTPGKINNDENGDIADDHYHRYLEDIELMSSLGVNVYRFSISWTRILPRGIYGNINPSGIMFYNKIIDNLLLRGIEPFVTIHHHDMPQELEEIYGGWISPLIQRDFVHFAEICFKSFGDRVKYWTTINEPNQFSDFAYMRGIYPPGRCSPPFGNCKTGNSDVEPLIALHNMLLSHAKAVDLYRKHFQVTIKCPKLAFVVTFARLGETGLKANIGV*

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