SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53770 | AT | Annotation by Michelle Graham. TAIR10: Nucleotidyltransferase family protein | chr5:21826733-21829858 FORWARD LENGTH=530 | SoyBase | E_val: 0 | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009688 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| KOG1906 | KOG | DNA polymerase sigma | JGI | ISS | |
| PTHR23092 | Panther | TOPOISOMERASE-RELATED PROTEIN | JGI | ISS | |
| PTHR23092:SF6 | Panther | TOPOISOMERASE-RELATED FUNCTION PROTEIN | JGI | ISS | |
| PF03828 | PFAM | Poly(A) polymerase | JGI | ISS | |
| UniRef100_B9SE42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SE42_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M390 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M390_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g35290 not represented in the dataset |
Glyma13g35290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g277700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g35290.2 sequence type=transcript gene model=Glyma13g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGAGCAGGAGCTTAAGATCCCCGAAACCATCATCTACGACACTATCGGTCCCCTCGCTCTCTCAGCCGTCGACGATTCTCCACTTTCCGACCACCTCGAACCCATCGCCGTTTTCCGCAACGAGATTTCCCTCGAAACGCCCCAACGCGCCTCGCCCGCCTCCGCCGCCGTCGATTTCTTCTCCCTTGATGTCGCCGCCGACGCCTCCGCCCGCGACCCCTTCCCTGAGTTGCTCGCCGCTGCCCCCGAACCGATGACGCCAGCTCCCGCGCCCGAGCCAAAGCTCGAGAGTGGCTGGTTCCACGGGAATTGCAAATTCAAGAGTCCCATGCTTCAACTGCATAAGGAGATAGTGGACTTTTGTGCGTTTTTGTCGCCAACTGCAGAAGAGAAAGCTGCACGAGACTTGGCTATAGAGTCTGTGTTTGGAGTTGTAAAACATATATGGCCTCACTGCCAGGTGGAGGTGTTCGGGTCTTTCAGGACAGTTGTCATTTTGAAATCAGGCTTGCAAAATCCGCAAATTGGCTTGAATGCAATTTCTAAAGCATTGTCACAAAGGGGCATGGCAAAAAAGATTCAGGTCATTGGAAAGGCTCGTGTGCCAATTATTAAATTTGTTGAAAAGAGGAGTGGTATTGCATTTGATATAAGTTTTGATATAGACAATGGACCCAAAGCAGCTGAGTATATCCAGGAAGCAGTGGTTAAGTGGCCACCACTAAGGCCCTTGTGTTTGATTTTGAAAGTATTTTTGCAGCAAAGAGAACTAAATGAGGTATATTCTGGTGGGATTGGTTCTTATGCCCTCCTTACCATGCTGATGGCAATGTTGCGGAATCTTCGCCTGAGCCAAGCTTCTGCTGAGCACAACCTGGGAGTTCTTTTGGTTCATTTTTTTGATTTCTATGGACGCAAATTGAACACCTCAGATGTTGGTGTGTCGTGTAATGGGACAGGCACCTTTTTCGTGAAGAGTAGTAAAGGGTTTTTAAACAGAGGACGACCAAGTCTTATTGCCATTGAGGATCCACAGGCACCAGAGAATGACATTGGGAAGAACTCCTTTAATTATTTCCAGACCAGATCCTGTCTTGCTGGAGCGTAAAGGCGGGTTGAACGGGGATGTGACTTTTGATAAGTTGCTTCCTGGTGCTGGTGAGCCGTTACAACAACAATATGGAGATGAGGATATGTTATGCAATTGGCAGTTAGATTATGAAGAAGAACCACTACCGCGCGGAGTCAACACCAGTGCAGAGCCTAGCACGCGTTCTTCAACAAAGAAGAGAAAATCTTCGTCAAAGAAGTCCAGTAAGAAGCTAAAGGAAAATGGGGATTTACAGATGGTCAGGAACGAAGAGAATGACTCTAGAAAAGAAAACAGTAAAAAGAAGAGAAGAAAGAAAAAAACACACCAAGGTGACAGCGGTTATTAGGCCATGGGCCAAGTTGCTGAAAGGTTTTCTACAAAATGGAATGCTTTGGGATTGCAATTTGATCAGTGGTTTGAAACTGAAGGAACAGGGCAGCATAAGCGTAAAAGCAAAATTTGAGTCCAATGTTGTCACACGACCCAAGGTAACGTGCCTTTAGTGTTTCTTAGATTAGGAATCATATACAATATTTTTTTAAAGGGTTAATGGTGACTTTAGTCTCTTAAAACACTATTAATCCGTTATTAAATTTTTATGTTGTCGTCTGTCCGATTTTGTTAGAGAAGTGAAGATGCCAACTCTGGTGACCAAAAACCAATGTAAAGAGGAATTGATGAGATTACGAAAGAAAATGAGTAAACGAGGGTATGCTTATGCCATATTA
>Glyma13g35290.1 sequence type=CDS gene model=Glyma13g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGAGCAGGAGCTTAAGATCCCCGAAACCATCATCTACGACACTATCGGTCCCCTCGCTCTCTCAGCCGTCGACGATTCTCCACTTTCCGACCACCTCGAACCCATCGCCGTTTTCCGCAACGAGATTTCCCTCGAAACGCCCCAACGCGCCTCGCCCGCCTCCGCCGCCGTCGATTTCTTCTCCCTTGATGTCGCCGCCGACGCCTCCGCCCGCGACCCCTTCCCTGAGTTGCTCGCCGCTGCCCCCGAACCGATGACGCCAGCTCCCGCGCCCGAGCCAAAGCTCGAGAGTGGCTGGTTCCACGGGAATTGCAAATTCAAGAGTCCCATGCTTCAACTGCATAAGGAGATAGTGGACTTTTGTGCGTTTTTGTCGCCAACTGCAGAAGAGAAAGCTGCACGAGACTTGGCTATAGAGTCTGTGTTTGGAGTTGTAAAACATATATGGCCTCACTGCCAGGTGGAGGTGTTCGGGTCTTTCAGGACAGTTGTCATTTTGAAATCAGGCTTGCAAAATCCGCAAATTGGCTTGAATGCAATTTCTAAAGCATTGTCACAAAGGGGCATGGCAAAAAAGATTCAGGTCATTGGAAAGGCTCGTGTGCCAATTATTAAATTTGTTGAAAAGAGGAGTGGTATTGCATTTGATATAAGTTTTGATATAGACAATGGACCCAAAGCAGCTGAGTATATCCAGGAAGCAGTGGTTAAGTGGCCACCACTAAGGCCCTTGTGTTTGATTTTGAAAGTATTTTTGCAGCAAAGAGAACTAAATGAGGTATATTCTGGTGGGATTGGTTCTTATGCCCTCCTTACCATGCTGATGGCAATGTTGCGGAATCTTCGCCTGAGCCAAGCTTCTGCTGAGCACAACCTGGGAGTTCTTTTGGTTCATTTTTTTGATTTCTATGGACGCAAATTGAACACCTCAGATGTTGGTGTGTCGTGTAATGGGACAGGCACCTTTTTCGTGAAGAGTAGTAAAGGGTTTTTAAACAGAGGACGACCAAGTCTTATTGCCATTGAGGATCCACAGGCACCAGAGAATGACATTGGGAAGAACTCCTTTAATTATTTCCAGGTTAGGTCAGCTTTTTCAATGGCTTTAAAAAATTTGACAGATGCCAAGATCATCACGAGCCTGGGACCTAACAGGAGCATTCTCGGCACTATAATTAGACCAGATCCTGTCTTGCTGGAGCGTAAAGGCGGGTTGAACGGGGATGTGACTTTTGATAAGTTGCTTCCTGGTGCTGGTGAGCCGTTACAACAACAATATGGAGATGAGGATATGTTATGCAATTGGCAGTTAGATTATGAAGAAGAACCACTACCGCGCGGAGTCAACACCAGTGCAGAGCCTAGCACGCGTTCTTCAACAAAGAAGAGAAAATCTTCGTCAAAGAAGTCCAGTAAGAAGCTAAAGGAAAATGGGGATTTACAGATGGTCAGGAACGAAGAGAATGACTCTAGAAAAGAAAACAGTAAAAAGAAGAGAAGAAAGAAAAAAACACACCAAGGTGACAGCGGTTATTAG >Glyma13g35290.2 sequence type=CDS gene model=Glyma13g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGAGCAGGAGCTTAAGATCCCCGAAACCATCATCTACGACACTATCGGTCCCCTCGCTCTCTCAGCCGTCGACGATTCTCCACTTTCCGACCACCTCGAACCCATCGCCGTTTTCCGCAACGAGATTTCCCTCGAAACGCCCCAACGCGCCTCGCCCGCCTCCGCCGCCGTCGATTTCTTCTCCCTTGATGTCGCCGCCGACGCCTCCGCCCGCGACCCCTTCCCTGAGTTGCTCGCCGCTGCCCCCGAACCGATGACGCCAGCTCCCGCGCCCGAGCCAAAGCTCGAGAGTGGCTGGTTCCACGGGAATTGCAAATTCAAGAGTCCCATGCTTCAACTGCATAAGGAGATAGTGGACTTTTGTGCGTTTTTGTCGCCAACTGCAGAAGAGAAAGCTGCACGAGACTTGGCTATAGAGTCTGTGTTTGGAGTTGTAAAACATATATGGCCTCACTGCCAGGTGGAGGTGTTCGGGTCTTTCAGGACAGTTGTCATTTTGAAATCAGGCTTGCAAAATCCGCAAATTGGCTTGAATGCAATTTCTAAAGCATTGTCACAAAGGGGCATGGCAAAAAAGATTCAGGTCATTGGAAAGGCTCGTGTGCCAATTATTAAATTTGTTGAAAAGAGGAGTGGTATTGCATTTGATATAAGTTTTGATATAGACAATGGACCCAAAGCAGCTGAGTATATCCAGGAAGCAGTGGTTAAGTGGCCACCACTAAGGCCCTTGTGTTTGATTTTGAAAGTATTTTTGCAGCAAAGAGAACTAAATGAGGTATATTCTGGTGGGATTGGTTCTTATGCCCTCCTTACCATGCTGATGGCAATGTTGCGGAATCTTCGCCTGAGCCAAGCTTCTGCTGAGCACAACCTGGGAGTTCTTTTGGTTCATTTTTTTGATTTCTATGGACGCAAATTGAACACCTCAGATGTTGGTGTGTCGTGTAATGGGACAGGCACCTTTTTCGTGAAGAGTAGTAAAGGGTTTTTAAACAGAGGACGACCAAGTCTTATTGCCATTGAGGATCCACAGGCACCAGAGAATGACATTGGGAAGAACTCCTTTAATTATTTCCAGACCAGATCCTGTCTTGCTGGAGCGTAA
>Glyma13g35290.1 sequence type=predicted peptide gene model=Glyma13g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEQELKIPETIIYDTIGPLALSAVDDSPLSDHLEPIAVFRNEISLETPQRASPASAAVDFFSLDVAADASARDPFPELLAAAPEPMTPAPAPEPKLESGWFHGNCKFKSPMLQLHKEIVDFCAFLSPTAEEKAARDLAIESVFGVVKHIWPHCQVEVFGSFRTVVILKSGLQNPQIGLNAISKALSQRGMAKKIQVIGKARVPIIKFVEKRSGIAFDISFDIDNGPKAAEYIQEAVVKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLRNLRLSQASAEHNLGVLLVHFFDFYGRKLNTSDVGVSCNGTGTFFVKSSKGFLNRGRPSLIAIEDPQAPENDIGKNSFNYFQVRSAFSMALKNLTDAKIITSLGPNRSILGTIIRPDPVLLERKGGLNGDVTFDKLLPGAGEPLQQQYGDEDMLCNWQLDYEEEPLPRGVNTSAEPSTRSSTKKRKSSSKKSSKKLKENGDLQMVRNEENDSRKENSKKKRRKKKTHQGDSGY* >Glyma13g35290.2 sequence type=predicted peptide gene model=Glyma13g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEQELKIPETIIYDTIGPLALSAVDDSPLSDHLEPIAVFRNEISLETPQRASPASAAVDFFSLDVAADASARDPFPELLAAAPEPMTPAPAPEPKLESGWFHGNCKFKSPMLQLHKEIVDFCAFLSPTAEEKAARDLAIESVFGVVKHIWPHCQVEVFGSFRTVVILKSGLQNPQIGLNAISKALSQRGMAKKIQVIGKARVPIIKFVEKRSGIAFDISFDIDNGPKAAEYIQEAVVKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLTMLMAMLRNLRLSQASAEHNLGVLLVHFFDFYGRKLNTSDVGVSCNGTGTFFVKSSKGFLNRGRPSLIAIEDPQAPENDIGKNSFNYFQTRSCLAGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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