Glyma13g35236 - SoyBase

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Report for Sequence Feature Glyma13g35236

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36718865
stop:	36724067
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g35236

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59440	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:23971397-23972729 FORWARD LENGTH=271	SoyBase	E_val: 4.00E-120	ISS
GO:0006233	GO-bp	Annotation by Michelle Graham. GO Biological Process: dTDP biosynthetic process	SoyBase	N/A	ISS
GO:0009061	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaerobic respiration	SoyBase	N/A	ISS
GO:0019690	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine deoxyribonucleoside interconversion	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thymidylate kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG3327	KOG	Thymidylate kinase/adenylate kinase	JGI		ISS
PTHR10344	Panther	THYMIDYLATE KINASE	JGI		ISS
PF02223	PFAM	Thymidylate kinase	JGI		ISS
UniRef100_G7IR90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thymidylate kinase n=1 Tax=Medicago truncatula RepID=G7IR90_MEDTR	SoyBase	E_val: 2.00E-158	ISS
UniRef100_I1M384	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M384_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g35236

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35236 not represented in the dataset	Glyma13g35236 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g35236 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g277200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g35236

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g35236

Limit To All Plant Sequences

>Glyma13g35236.2   sequence type=transcript   gene model=Glyma13g35236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGTGACAAAAAGAGAAGCCCACATGACATGCTTCTGTTGTGTAGTTGTAGCTTGAGGGTTTTTTCGATTGAAGCATTACACCACTCCACTTTAGTCTCTCCTACTTGCCACAACCCCTATTGAGGGTTTTTAGGACGCGTAAAAGTGATGCCACGTGCCCTAATTCAGGACATTAAACCATAGCTAGCGTCTCCTTGCGAAAAATGACCATAAGCTTACAGTTTAAGGGCTTTGTGAGGATATGATCTATGGCACTTGTGTCACAGCTTCCAAGTCACTGATTTTCAGAGCGTTAGTGTTGCAGAAGCCATTAAATTTTCAAGTAAAATTCTCCTCCAAGTGTTTTCCTACGAAGATAAGAATGGAAAGTAATCTTAATCATAGCATAGAGGGCAACAATAAAGCGTCTAGGGGTGCCTTGGTTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGGCTAGTGTCCTTCTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGATTTCCCGACAGAACTACAAATGTTGGGCAAATGATATCTGCCTATCTAACTAACACATCTCAGTTGGATGATCATACTATTCATCTCCTCTTCAGCGCTAATCGTTGGGAAAAGAGGTCATTGATGGAATCAAAACTGAAAACTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAGGGACTTGATTTTGAATGGTGTAAGGTCCCAGAGATTGGATTGCCAGCACCAGATGTGGTAGTATACCTTGACATATCTCCAGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGATTGGTACAAAGTTCTTCATGATGTTTCCTGGAAGGATGTTGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGTTGCAAGAGATTGTTCTTGATTGTGTCACAGAATGCCGGAAGGGGAAGCCCCTTTCCACCTTGTGGTCGAAGTAGACACGCCTTGATACATGAGAACAAATATGTCAGATGTATTATTTTGAACACCAAAACCCATTTTTGTGTAACTCTGGTTGCTCTTTTTTTATATCTTATAATCACAAATTAATTCGTTTGCGAAGCAATTTGAAGAAAGCCTCGAAATTTATAATATGCCCAAGCTCAAGCTGGAAGGATTGAAAATTTTCTGATCCAACAAATGTGATGCAGCAGCTTTCTGTAACCCTGATGAGGTCCAGATTTTATGTGCCCAATTTCACTGAAGTTTAACTATACATCAGGACTGCCTCAAAAGTGTTTAATGCTTGTGAAACTAGTAGGAAAGTATTTTGGGAAAAGCCAAATTGATACGAGTTTATTTATCTATTAATATGTTACCTAGTTATTGGCAATTGGATAGCCTTTAAATGAATTCTATTGCCTCAAGTGTTTGATATTTTATATCTAGTTTTATAACCGG

Coding sequences of Glyma13g35236

Limit To All Plant Sequences

>Glyma13g35236.1   sequence type=CDS   gene model=Glyma13g35236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTATGGCACTTGTGTCACAGCTTCCAAGTCACTGATTTTCAGAGCGTTAGTGTTGCAGAAGCCATTAAATTTTCAAGTAAAATTCTCCTCCAAGTGTTTTCCTACGAAGATAAGAATGGAAAGTAATCTTAATCATAGCATAGAGGGCAACAATAAAGCGTCTAGGGGTGCCTTGGTTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGGCTAGTGTCCTTCTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGATTTCCCGACAGAACTACAAATGTTGGGCAAATGATATCTGCCTATCTAACTAACACATCTCAGTTGGATGATCATACTATTCATCTCCTCTTCAGCGCTAATCGTTGGGAAAAGAGGTCATTGATGGAATCAAAACTGAAAACTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAGGGACTTGATTTTGAATGGTGTAAGGTCCCAGAGATTGGATTGCCAGCACCAGATGTGGTAGTATACCTTGACATATCTCCAGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGATTGGTACAAAGTTCTTCATGATGTTTCCTGGAAGGATGTTGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGTTGCAAGAGATTGTTCTTGATTGTGTCACAGAATGCCGGAAGGGGAAGCCCCTTTCCACCTTGTGGTCGAAGTAG

>Glyma13g35236.2   sequence type=CDS   gene model=Glyma13g35236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTATGGCACTTGTGTCACAGCTTCCAAGTCACTGATTTTCAGAGCGTTAGTGTTGCAGAAGCCATTAAATTTTCAAGTAAAATTCTCCTCCAAGTGTTTTCCTACGAAGATAAGAATGGAAAGTAATCTTAATCATAGCATAGAGGGCAACAATAAAGCGTCTAGGGGTGCCTTGGTTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTAGCAGGCTAGTGTCCTTCTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGATTTCCCGACAGAACTACAAATGTTGGGCAAATGATATCTGCCTATCTAACTAACACATCTCAGTTGGATGATCATACTATTCATCTCCTCTTCAGCGCTAATCGTTGGGAAAAGAGGTCATTGATGGAATCAAAACTGAAAACTGGAACAACCCTCATTGTTGACCGTTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAGGGACTTGATTTTGAATGGTGTAAGGTCCCAGAGATTGGATTGCCAGCACCAGATGTGGTAGTATACCTTGACATATCTCCAGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGATTGGTACAAAGTTCTTCATGATGTTTCCTGGAAGGATGTTGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGTTGCAAGAGATTGTTCTTGATTGTGTCACAGAATGCCGGAAGGGGAAGCCCCTTTCCACCTTGTGGTCGAAGTAG

Predicted protein sequences of Glyma13g35236

Limit To All Plant Sequences

>Glyma13g35236.1   sequence type=predicted peptide   gene model=Glyma13g35236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIYGTCVTASKSLIFRALVLQKPLNFQVKFSSKCFPTKIRMESNLNHSIEGNNKASRGALVVLEGLDRSGKSSQCSRLVSFLEGQGISAELWRFPDRTTNVGQMISAYLTNTSQLDDHTIHLLFSANRWEKRSLMESKLKTGTTLIVDRYSYSGVAFSSAKGLDFEWCKVPEIGLPAPDVVVYLDISPEKAAERGGYGGERYEKLEFQKKVADWYKVLHDVSWKDVDACQPIEDVEKQLQEIVLDCVTECRKGKPLSTLWSK*

>Glyma13g35236.2   sequence type=predicted peptide   gene model=Glyma13g35236   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIYGTCVTASKSLIFRALVLQKPLNFQVKFSSKCFPTKIRMESNLNHSIEGNNKASRGALVVLEGLDRSGKSSQCSRLVSFLEGQGISAELWRFPDRTTNVGQMISAYLTNTSQLDDHTIHLLFSANRWEKRSLMESKLKTGTTLIVDRYSYSGVAFSSAKGLDFEWCKVPEIGLPAPDVVVYLDISPEKAAERGGYGGERYEKLEFQKKVADWYKVLHDVSWKDVDACQPIEDVEKQLQEIVLDCVTECRKGKPLSTLWSK*

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