Glyma13g35065 - SoyBase

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Report for Sequence Feature Glyma13g35065

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36559655
stop:	36564065
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g35065

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23560	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr3:8454361-8456588 REVERSE LENGTH=477	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0009636	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to toxin	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF12	Panther	MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_B9SQH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 12 protein, putative n=1 Tax=Ricinus communis RepID=B9SQH4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BA95	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BA95 related cluster n=1 Tax=unknown RepID=UPI000233BA95	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g35065

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g35065 not represented in the dataset	Glyma13g35065 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g35065

Paralog	Evidence	Comments
Glyma12g35420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g35065 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g275500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g35065

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g35065

Limit To All Plant Sequences

>Glyma13g35065.2   sequence type=transcript   gene model=Glyma13g35065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGTTCTCCCATGGCCGAGGCCCGAGATCAGACAACCTACTCGTGAAGCATATTCGAATAATGAATATTGTAACTCAAGACTTGGGGATAAATCTACAAAATAAGACAAAGTAACCCAATGGAAACTATGAAAAAGAAATTCGTTACCTGTGCAACAACCCAAAATCAAATTATTTAGAATCGCCAAGGGAATTATTTGGCATGATAGTAGATCATTATTTCGATGCTGCATGATGATTGATCCATAATAGATACAACCACGATGGCGACCAAAGCTGTTCCTCGTATCATATTCTGGGTTTATGGTTAATACAAAAAGCACCTCTGAAACTTTCAGCAGCATTTATCTGTCATAAAGTAACTTTTGGCTCATAGTTTTGTATAATAAAGTCGTTTGGCAGTATATATATAGCGATCAGCAATCATTCAAGTGCTTCCTCATCAGATATATGCAGATAACGTAGAGCAGATGAAAGAGGAGATAGAGAAGATGGTGGCAAGTAACAGCTCGGATGATAGCATAGGAACACCTCTAGTAATAAGGGGATCTGATAATAATGGAAGAGATCAAAACACAAGACTCCACCAAGTTGAGGGATGGTGGAACAAAGTGTTGGACATGGAAGAGGCTAAGTGCCAACTCTTGTTTTCACTGCCAATGATTCTCACCAACACGTTCTATTACTTGATAACTTCGATTTCTGTCATGCTTGTTGGTCACCTTGGCGAGCTTCAACTTGCTGGCTCTACTCTGGCAAACTCGTGGTTCAATGTCACTGGCTCTGCTGTCATGGTTGGTTTGAGTGGGGCACTGGAAACACTCTGCGGGCAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGCCTCATGCATCATATCTCTAATTTTTTCCATCATTATATCCATTATTTGGTTCTATACAGAACCTATCCTAGTGTTGCTTCATCAATCTCATGACATTGCAAGAACAACTGCTCTTTATATGAAGTTTCTTATCCCAGGATTATTTGCATATAGCTTCTTGCAAAATATCTTGAGGTTTCTCCAGACACAATCTGTGGTAATGCCATTGGTTGCACTCTCAGCTCTTCCATTGTTGATTCATATTGGTATTGCATATGGCTTAGTTCAGTGGCCAGGTCTGAGTTTCACAGGTGCACCAGTTGCAACTTCTATTTCACAATGGATATCAATGCTATTATTGGCCTTGTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAGGGATTTTCAATGCATTCATTCCATTATGTATTTACAAACATGAAACTGGCCCTGCCCTCTGCTGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTTTTGGTTTTATTGGCTGGTCTGTTGCCTGACTCACAGATAACAACTTCATTGATTGCAATATGTTTAAACACACAATTCATTGCGTACATGGTCCCTGTTGGTCTTGGTGCAGCTGGAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCAGAACAAGCTAAACATGCAATGAATGTCACCGTGAAGCTCTCTTTCCTCTTTAGTTTCTGTTTTGCTTTGGCACTTGGATTTGGCCATAATATCTGGATTCAGCTTTTCAGTGGTAGTGCTAAAATTAAAGAGGAGTTTGCTTCAATGATACCCTTGCTTGCCATTTCCATAGTACTAGATGCTGTCCAAGGTGTCATGCAAGGGGTGGCCAGAGGATGTGGTTGGCAGCACTCAACTGTTTATATTAACCTTGCAACTTTTTATCTTGTTGGTTTACCAATATCATGTCTCCTAGGATTTAAGACCAATTTGCATTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGCTATGCCAAGTTGTGACTCTCTTCCTTTTCTTAAGGCTTGCCAAATGGACTAAATTGGATCTCTCTGGGGACAAAGATAAAGACCACCCTCTTGTTGTTTAACTGAATGTCTGCCAATCTGGCACTGAAGTTATGAACTAAGATGATCACAAATTGGGGTGAACATGATTTTGGGTGTTTAATACTGGATGCAATGAGGAGGAGGATTGGTTCAGGTAGGTTACTGAATGGACTCTGCTAACTGGAAGGAGCTAGTGCACAGTCTTCACAACACCCACCAAGGACTGTAAGAAATGAAAATTGTAATGAAATTTGTAACATTGTTTCCATTCTTTTAGATTTGGACATACTTAGCTAGGACTGAAACTTTAAGCAATTCGAACCCTGCTATTGATGTGAATAAGAATTCAATTTGTTACATTTGCTTTCAAAGCATAGAATTATCCTGGTTCAAGTAGGCTATGCTATATGCTAGCGTCAGGCAGTTTGATCTATTTCCTCCCCTAGCTACGCCCCGTCGTATTCACCATTTACACTTAGTTGTCTTCCTAGTTTAAGCTCTTGAGCACAGCAGTAGTTGAAATTAAACAGAAAATCAATACAATAGAATCTATAAGTAGGGGTTGGTTTCAGAGAATAATAATAATAATAAGATCATTGCTGTCTCCAAATAGGCAAGAAGAACTAGAGCAGTACCAGCATACCGAGAGGGAAAGCTATTCAGAAATTTGATACTTTCTTAAATATTTCAGTTTTTTTTTACCCTGTATCTAGAAGA

Coding sequences of Glyma13g35065

Limit To All Plant Sequences

>Glyma13g35065.1   sequence type=CDS   gene model=Glyma13g35065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGGAGATAGAGAAGATGGTGGCAAGTAACAGCTCGGATGATAGCATAGGAACACCTCTAGTAATAAGGGGATCTGATAATAATGGAAGAGATCAAAACACAAGACTCCACCAAGTTGAGGGATGGTGGAACAAAGTGTTGGACATGGAAGAGGCTAAGTGCCAACTCTTGTTTTCACTGCCAATGATTCTCACCAACACGTTCTATTACTTGATAACTTCGATTTCTGTCATGCTTGTTGGTCACCTTGGCGAGCTTCAACTTGCTGGCTCTACTCTGGCAAACTCGTGGTTCAATGTCACTGGCTCTGCTGTCATGGTTGGTTTGAGTGGGGCACTGGAAACACTCTGCGGGCAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGCCTCATGCATCATATCTCTAATTTTTTCCATCATTATATCCATTATTTGGTTCTATACAGAACCTATCCTAGTGTTGCTTCATCAATCTCATGACATTGCAAGAACAACTGCTCTTTATATGAAGTTTCTTATCCCAGGATTATTTGCATATAGCTTCTTGCAAAATATCTTGAGGTTTCTCCAGACACAATCTGTGGTAATGCCATTGGTTGCACTCTCAGCTCTTCCATTGTTGATTCATATTGGTATTGCATATGGCTTAGTTCAGTGGCCAGGTCTGAGTTTCACAGGTGCACCAGTTGCAACTTCTATTTCACAATGGATATCAATGCTATTATTGGCCTTGTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAGGGATTTTCAATGCATTCATTCCATTATGTATTTACAAACATGAAACTGGCCCTGCCCTCTGCTGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTTTTGGTTTTATTGGCTGGTCTGTTGCCTGACTCACAGATAACAACTTCATTGATTGCAATATGTTTAAACACACAATTCATTGCGTACATGGTCCCTGTTGGTCTTGGTGCAGCTGGAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCAGAACAAGCTAAACATGCAATGAATGTCACCGTGAAGCTCTCTTTCCTCTTTAGTTTCTGTTTTGCTTTGGCACTTGGATTTGGCCATAATATCTGGATTCAGCTTTTCAGTGGTAGTGCTAAAATTAAAGAGGAGTTTGCTTCAATGATACCCTTGCTTGCCATTTCCATAGTACTAGATGCTGTCCAAGGTGTCATGCAAGGGGTGGCCAGAGGATGTGGTTGGCAGCACTCAACTGTTTATATTAACCTTGCAACTTTTTATCTTGTTGGTTTACCAATATCATGTCTCCTAGGATTTAAGACCAATTTGCATTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGCTATGCCAAGTTGTGACTCTCTTCCTTTTCTTAAGGCTTGCCAAATGGACTAAATTGGATCTCTCTGGGGACAAAGATAAAGACCACCCTCTTGTTGTTTAA

>Glyma13g35065.2   sequence type=CDS   gene model=Glyma13g35065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGGAGATAGAGAAGATGGTGGCAAGTAACAGCTCGGATGATAGCATAGGAACACCTCTAGTAATAAGGGGATCTGATAATAATGGAAGAGATCAAAACACAAGACTCCACCAAGTTGAGGGATGGTGGAACAAAGTGTTGGACATGGAAGAGGCTAAGTGCCAACTCTTGTTTTCACTGCCAATGATTCTCACCAACACGTTCTATTACTTGATAACTTCGATTTCTGTCATGCTTGTTGGTCACCTTGGCGAGCTTCAACTTGCTGGCTCTACTCTGGCAAACTCGTGGTTCAATGTCACTGGCTCTGCTGTCATGGTTGGTTTGAGTGGGGCACTGGAAACACTCTGCGGGCAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGCCTCATGCATCATATCTCTAATTTTTTCCATCATTATATCCATTATTTGGTTCTATACAGAACCTATCCTAGTGTTGCTTCATCAATCTCATGACATTGCAAGAACAACTGCTCTTTATATGAAGTTTCTTATCCCAGGATTATTTGCATATAGCTTCTTGCAAAATATCTTGAGGTTTCTCCAGACACAATCTGTGGTAATGCCATTGGTTGCACTCTCAGCTCTTCCATTGTTGATTCATATTGGTATTGCATATGGCTTAGTTCAGTGGCCAGGTCTGAGTTTCACAGGTGCACCAGTTGCAACTTCTATTTCACAATGGATATCAATGCTATTATTGGCCTTGTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAGGGATTTTCAATGCATTCATTCCATTATGTATTTACAAACATGAAACTGGCCCTGCCCTCTGCTGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTTTTGGTTTTATTGGCTGGTCTGTTGCCTGACTCACAGATAACAACTTCATTGATTGCAATATGTTTAAACACACAATTCATTGCGTACATGGTCCCTGTTGGTCTTGGTGCAGCTGGAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCAGAACAAGCTAAACATGCAATGAATGTCACCGTGAAGCTCTCTTTCCTCTTTAGTTTCTGTTTTGCTTTGGCACTTGGATTTGGCCATAATATCTGGATTCAGCTTTTCAGTGGTAGTGCTAAAATTAAAGAGGAGTTTGCTTCAATGATACCCTTGCTTGCCATTTCCATAGTACTAGATGCTGTCCAAGGTGTCATGCAAGGGGTGGCCAGAGGATGTGGTTGGCAGCACTCAACTGTTTATATTAACCTTGCAACTTTTTATCTTGTTGGTTTACCAATATCATGTCTCCTAGGATTTAAGACCAATTTGCATTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGCTATGCCAAGTTGTGACTCTCTTCCTTTTCTTAAGGCTTGCCAAATGGACTAAATTGGATCTCTCTGGGGACAAAGATAAAGACCACCCTCTTGTTGTTTAA

Predicted protein sequences of Glyma13g35065

Limit To All Plant Sequences

>Glyma13g35065.1   sequence type=predicted peptide   gene model=Glyma13g35065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEEIEKMVASNSSDDSIGTPLVIRGSDNNGRDQNTRLHQVEGWWNKVLDMEEAKCQLLFSLPMILTNTFYYLITSISVMLVGHLGELQLAGSTLANSWFNVTGSAVMVGLSGALETLCGQGFGAKEYQMLGIYLQASCIISLIFSIIISIIWFYTEPILVLLHQSHDIARTTALYMKFLIPGLFAYSFLQNILRFLQTQSVVMPLVALSALPLLIHIGIAYGLVQWPGLSFTGAPVATSISQWISMLLLALYVMYAKKFKQTWQGFSMHSFHYVFTNMKLALPSAAMVCLEYWAFEVLVLLAGLLPDSQITTSLIAICLNTQFIAYMVPVGLGAAGSTRVSNELGAGNPEQAKHAMNVTVKLSFLFSFCFALALGFGHNIWIQLFSGSAKIKEEFASMIPLLAISIVLDAVQGVMQGVARGCGWQHSTVYINLATFYLVGLPISCLLGFKTNLHYKGLWIGLICGLLCQVVTLFLFLRLAKWTKLDLSGDKDKDHPLVV*

>Glyma13g35065.2   sequence type=predicted peptide   gene model=Glyma13g35065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEEIEKMVASNSSDDSIGTPLVIRGSDNNGRDQNTRLHQVEGWWNKVLDMEEAKCQLLFSLPMILTNTFYYLITSISVMLVGHLGELQLAGSTLANSWFNVTGSAVMVGLSGALETLCGQGFGAKEYQMLGIYLQASCIISLIFSIIISIIWFYTEPILVLLHQSHDIARTTALYMKFLIPGLFAYSFLQNILRFLQTQSVVMPLVALSALPLLIHIGIAYGLVQWPGLSFTGAPVATSISQWISMLLLALYVMYAKKFKQTWQGFSMHSFHYVFTNMKLALPSAAMVCLEYWAFEVLVLLAGLLPDSQITTSLIAICLNTQFIAYMVPVGLGAAGSTRVSNELGAGNPEQAKHAMNVTVKLSFLFSFCFALALGFGHNIWIQLFSGSAKIKEEFASMIPLLAISIVLDAVQGVMQGVARGCGWQHSTVYINLATFYLVGLPISCLLGFKTNLHYKGLWIGLICGLLCQVVTLFLFLRLAKWTKLDLSGDKDKDHPLVV*

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