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Report for Sequence Feature Glyma13g34935

Feature Type:gene_model
Chromosome:Gm13
Start:36427774
stop:36429342
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g34935
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18790AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L33 family protein | chr5:6266324-6266500 REVERSE LENGTH=58 SoyBaseE_val: 2.00E-13ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0015934GO-cc Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3505 KOG Mitochondrial/chloroplast ribosomal protein L33-like JGI ISS
PTHR15238Panther FAMILY NOT NAMED JGI ISS
PF00471PFAM Ribosomal protein L33 JGI ISS
UniRef100_E6ZMV6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Probable 50s ribosomal protein L33 n=1 Tax=Sporisorium reilianum SRZ2 RepID=E6ZMV6_SPORE SoyBaseE_val: 5.00E-11ISS
UniRef100_I1M354UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M354_SOYBN SoyBaseE_val: 3.00E-24ISS

Expression Patterns of Glyma13g34935
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g34935 not represented in the dataset
Glyma13g34935 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g34935 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g274200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g34935
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g34935
>Glyma13g34935.1   sequence type=CDS   gene model=Glyma13g34935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGGATGATTGATTATGTATATAGGTTGCTTGTCAACGACACGTGCTCCTGTTGTTTGTGTATGGCCCAAAGAAAGGCTTCAAGAAGCAGCAGTAAGGAAAAGAATAAGATCATCAGGGTTGTCTCAACGGCTGGGACTGGATTCTTTTATGCCATGAGGAAAAGCAGGAAGATGGACAAGCTTGAGCTGAAGAAATATGATCCAAAGGTAAAGCGCCATGTTGTGTTCAGAGAATCCAAATAA
Predicted protein sequences of Glyma13g34935
>Glyma13g34935.1   sequence type=predicted peptide   gene model=Glyma13g34935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGMIDYVYRLLVNDTCSCCLCMAQRKASRSSSKEKNKIIRVVSTAGTGFFYAMRKSRKMDKLELKKYDPKVKRHVVFRESK*






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