SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15150 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:5102210-5104082 REVERSE LENGTH=249 | SoyBase | E_val: 3.00E-86 | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0010082 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of root meristem growth | SoyBase | N/A | ISS |
| GO:0016925 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein sumoylation | SoyBase | N/A | ISS |
| GO:0032876 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045931 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0048509 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem development | SoyBase | N/A | ISS |
| GO:0080038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0019789 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: SUMO ligase activity | SoyBase | N/A | ISS |
| PTHR21330 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR21330:SF1 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF11789 | PFAM | Zinc-finger of the MIZ type in Nse subunit | JGI | ISS | |
| UniRef100_I1M345 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M345_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8GYH7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 SUMO-protein ligase MMS21 n=1 Tax=Arabidopsis thaliana RepID=NSE2_ARATH | SoyBase | E_val: 1.00E-83 | ISS |
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Glyma13g34860 not represented in the dataset |
Glyma13g34860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g273500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34860.2 sequence type=CDS gene model=Glyma13g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCATAACTCATGACCTCAAAGGACAAAATTATGTGTTTGGCGAACTTGAATTTATTGGCTTGTGTGGCTTTCTCCCTCCAAAAAACTCCCCTCTTTTCCGTCGGAGAATGGCGTCATCTTCACAAAGCCGCTGTGGCAGCGGCAGCGCCGCCTCACGACTGAGGAACGCAGCTTCCACCTTCTGCTCCGACTCACAGCCTCTCCTTGCCGATATCCGAAAAACCGTGCTTATGATGAAGGACATCGCAGTTCAATTGGAGAAAGACAACCTCCCTGACAAGGCGAAGGAACTGGAAGATGCGGTTATTGAGTTAGTAGGGCTATCTGAGCTCAGTGTGCAATTTTCATCAGCGGTTCAAGCTTTTGCTAACGCATACCAGCCTAAGGAAGAGTTCACTAATTTTAATACGTTGTTTGAGGATGAGCTTTCCAGGTTTAAGGCCAACCAATCTTCAGATGTTCCTAAAAATCCTGTAGTACGCCAATTTAAGGAAGCTGTGTGGAATGTTCATCATGCGGGGCAGCCAATGCCAGGCGAAGAGCAGGAGGATATTGTAATGACCAGTATCCAGTCCAACATTTTGAATATTACCTGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGCATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAAGTCAAAGCAACATCAATGCCCAATTTCAGGTTGCCCAAAGATATTGCAGGCAGATAAGCTGGTGCAAGATCCGTTGTTAATGATTGAGATTGAGGAAATGCGCAAAATGAATAGAGAAACTGACGTAGAAGATTATACCATGCTTAATGAAGATTAG
>Glyma13g34860.2 sequence type=predicted peptide gene model=Glyma13g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVITHDLKGQNYVFGELEFIGLCGFLPPKNSPLFRRRMASSSQSRCGSGSAASRLRNAASTFCSDSQPLLADIRKTVLMMKDIAVQLEKDNLPDKAKELEDAVIELVGLSELSVQFSSAVQAFANAYQPKEEFTNFNTLFEDELSRFKANQSSDVPKNPVVRQFKEAVWNVHHAGQPMPGEEQEDIVMTSIQSNILNITCPLSGKPVTELAEPVRSMECRHIYEKKVIMQYLKSKQHQCPISGCPKILQADKLVQDPLLMIEIEEMRKMNRETDVEDYTMLNED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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