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A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G53210 | AT | Annotation by Michelle Graham. TAIR10: sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585 | SoyBase | E_val: 3.00E-85 | ISS |
GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
GO:0000325 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
KOG0027 | KOG | Calmodulin and related proteins (EF-Hand superfamily) | JGI | ISS | |
PTHR10891 | Panther | CALMODULIN | JGI | ISS | |
PTHR10891:SF44 | Panther | CALCIUM BINDING PROTEIN | JGI | ISS | |
PF01699 | PFAM | Sodium/calcium exchanger protein | JGI | ISS | |
PF10591 | PFAM | Secreted protein acidic and rich in cysteine Ca binding region | JGI | ISS | |
UniRef100_B9S960 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9S960_RICCO | SoyBase | E_val: 6.00E-129 | ISS |
UniRef100_UPI000233B92E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B92E related cluster n=1 Tax=unknown RepID=UPI000233B92E | SoyBase | E_val: 0 | ISS |
Glyma13g34731 not represented in the dataset |
Glyma13g34731 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.13g272100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34731.2 sequence type=transcript gene model=Glyma13g34731 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAAGAATCTTTCCTCGTTTACGAGAGACTTTTCTTTAAACTGTGGAGCAAGTAAACCCATTGCATGACTTTCAATTACTTGTTTTGTTTTAGTCAACTAGACGTTTATATAATTTATCCTTATAGTCTAAAGCTCTAAAAAAATCGCTTTGAGGATTCTGTGCATCCTATTATTGTTCCTTTGCTCAATTTTCAGAAAGAAAAAATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGCTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCCAGCCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTCGGTTTCTTTGCAATCTCGGTTCTGATCTTTGTGCGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTTGTTGCAATTGTTTGTGCAATAACGGGCATTACTGCAAGTTTTCACTCCATTTTCCCTATATGGTCATCCTTCATTGCAATTCTCTTATACCCATTGTCTTTGGTTCTGGTTTTTATACTTGACCATGTTCTCAATTATAATTAACAACCCTAGAGTGTTGTGACCAATTGAAAAAATATATTTATTTATTTATTTTGAGAAATGAGAATTTCATTTTAGTTCAATTTTTAGCATGAATTTTTTAAATGATATGTATGTTTGGA
>Glyma13g34731.1 sequence type=CDS gene model=Glyma13g34731 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGCTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGACCTGGGAAGAGGCTGACATCGTAGTGGAAGAGAGGCAAAACAATGCAGTAGTTGATAAATCAATATGGGCATGGATTAAGGCCATAACATATGTTATGCTAGGAATTGCTATGCTATCAATTTTGGCAGAGCCACTGACAGAAAGTGTCCACAACTTCTCTAACAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCCAGCCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTCGGTTTCTTTGCAATCTCGGTTCTGATCTTTGTGCGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTTGTTGCAATTGTTTGTGCAATAACGGGCATTACTGCAAGTTTTCACTCCATTTTCCCTATATGGTCATCCTTCATTGCAATTCTCTTATACCCATTGTCTTTGGTTCTGGTTTTTATACTTGACCATGTTCTCAATTATAATTAA >Glyma13g34731.2 sequence type=CDS gene model=Glyma13g34731 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGCTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCCACAAATGCTAG
>Glyma13g34731.1 sequence type=predicted peptide gene model=Glyma13g34731 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRNVSKTPYFIFLLVLVTVEVQGRYLPERATELVSDGVHNNLQHNETSYLVLKGIDDESFEEPCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFQILGALPESLILLVSGLVSNREIAQEYAFSGVGLLAGSSILLLTVVWGSCVIAGSQEFEHDSPTSNSAHTSLKALLTGCGITTDLETSYTARIMVCSVIPLAIMQIPNLFQFSSGLRSVTLVIALLITSIFLFLYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEKEIKEVLKVFDLDGDKKINKEEFVSGFTKWLDQTKHALKKQYFSRKSLKDIYQAFGPWIENKRKEREGKKQLIFEILRHVQSDVVGSLLTEDGKPDQHAIRGLFEKIDRNRDNFISQSELKELIMNIKFVKASMEVEEAVALVIEELDIDKDRTINEKEFVAGFEKWLSSTSAPAPVSDSESQEDMFQTWEEADIVVEERQNNAVVDKSIWAWIKAITYVMLGIAMLSILAEPLTESVHNFSNSAGFHPFFMSFILAPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISVLIFVREVTWQFSAELLVVAIVCAITGITASFHSIFPIWSSFIAILLYPLSLVLVFILDHVLNYN* >Glyma13g34731.2 sequence type=predicted peptide gene model=Glyma13g34731 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRNVSKTPYFIFLLVLVTVEVQGRYLPERATELVSDGVHNNLQHNETSYLVLKGIDDESFEEPCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFQILGALPESLILLVSGLVSNREIAQEYAFSGVGLLAGSSILLLTVVWGSCVIAGSQEFEHDSPTSNSAHTSLKALLTGCGITTDLETSYTARIMVCSVIPLAIMQIPNLFQFSSGLRSVTLVIALLITSIFLFLYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEKEIKEVLKVFDLDGDKKINKEEFVSGFTKWLDQTKHALKKQYFSRKSLKDIYQAFGPWIENKRKEREGKKQLIFEILRHVQSDVVGSLLTEDGKPDQHAIRGLFEKIDRNRDNFISQSELKELIMNIKFVKASMEVEEAVALVIEELDIDKDRTINEKEFVAGFEKWLSSTSAPAPVSDSESQEDMFQCRIPSILHVIYSSSLGHKC*
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