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Report for Sequence Feature Glyma13g34731

Feature Type:gene_model
Chromosome:Gm13
Start:36264886
stop:36273208
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53210AT Annotation by Michelle Graham. TAIR10: sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585 SoyBaseE_val: 3.00E-85ISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF44Panther CALCIUM BINDING PROTEIN JGI ISS
PF01699PFAM Sodium/calcium exchanger protein JGI ISS
PF10591PFAM Secreted protein acidic and rich in cysteine Ca binding region JGI ISS
UniRef100_B9S960UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9S960_RICCO SoyBaseE_val: 6.00E-129ISS
UniRef100_UPI000233B92EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B92E related cluster n=1 Tax=unknown RepID=UPI000233B92E SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g34731 not represented in the dataset

Glyma13g34731 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g272100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g34731.2   sequence type=transcript   gene model=Glyma13g34731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAGAATCTTTCCTCGTTTACGAGAGACTTTTCTTTAAACTGTGGAGCAAGTAAACCCATTGCATGACTTTCAATTACTTGTTTTGTTTTAGTCAACTAGACGTTTATATAATTTATCCTTATAGTCTAAAGCTCTAAAAAAATCGCTTTGAGGATTCTGTGCATCCTATTATTGTTCCTTTGCTCAATTTTCAGAAAGAAAAAATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGCTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCCAGCCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTCGGTTTCTTTGCAATCTCGGTTCTGATCTTTGTGCGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTTGTTGCAATTGTTTGTGCAATAACGGGCATTACTGCAAGTTTTCACTCCATTTTCCCTATATGGTCATCCTTCATTGCAATTCTCTTATACCCATTGTCTTTGGTTCTGGTTTTTATACTTGACCATGTTCTCAATTATAATTAACAACCCTAGAGTGTTGTGACCAATTGAAAAAATATATTTATTTATTTATTTTGAGAAATGAGAATTTCATTTTAGTTCAATTTTTAGCATGAATTTTTTAAATGATATGTATGTTTGGA

>Glyma13g34731.1   sequence type=CDS   gene model=Glyma13g34731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGCTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGACCTGGGAAGAGGCTGACATCGTAGTGGAAGAGAGGCAAAACAATGCAGTAGTTGATAAATCAATATGGGCATGGATTAAGGCCATAACATATGTTATGCTAGGAATTGCTATGCTATCAATTTTGGCAGAGCCACTGACAGAAAGTGTCCACAACTTCTCTAACAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCCAGCCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTCGGTTTCTTTGCAATCTCGGTTCTGATCTTTGTGCGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTTGTTGCAATTGTTTGTGCAATAACGGGCATTACTGCAAGTTTTCACTCCATTTTCCCTATATGGTCATCCTTCATTGCAATTCTCTTATACCCATTGTCTTTGGTTCTGGTTTTTATACTTGACCATGTTCTCAATTATAATTAA

>Glyma13g34731.2   sequence type=CDS   gene model=Glyma13g34731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGCTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCCACAAATGCTAG

>Glyma13g34731.1   sequence type=predicted peptide   gene model=Glyma13g34731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRNVSKTPYFIFLLVLVTVEVQGRYLPERATELVSDGVHNNLQHNETSYLVLKGIDDESFEEPCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFQILGALPESLILLVSGLVSNREIAQEYAFSGVGLLAGSSILLLTVVWGSCVIAGSQEFEHDSPTSNSAHTSLKALLTGCGITTDLETSYTARIMVCSVIPLAIMQIPNLFQFSSGLRSVTLVIALLITSIFLFLYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEKEIKEVLKVFDLDGDKKINKEEFVSGFTKWLDQTKHALKKQYFSRKSLKDIYQAFGPWIENKRKEREGKKQLIFEILRHVQSDVVGSLLTEDGKPDQHAIRGLFEKIDRNRDNFISQSELKELIMNIKFVKASMEVEEAVALVIEELDIDKDRTINEKEFVAGFEKWLSSTSAPAPVSDSESQEDMFQTWEEADIVVEERQNNAVVDKSIWAWIKAITYVMLGIAMLSILAEPLTESVHNFSNSAGFHPFFMSFILAPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISVLIFVREVTWQFSAELLVVAIVCAITGITASFHSIFPIWSSFIAILLYPLSLVLVFILDHVLNYN*

>Glyma13g34731.2   sequence type=predicted peptide   gene model=Glyma13g34731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRNVSKTPYFIFLLVLVTVEVQGRYLPERATELVSDGVHNNLQHNETSYLVLKGIDDESFEEPCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFQILGALPESLILLVSGLVSNREIAQEYAFSGVGLLAGSSILLLTVVWGSCVIAGSQEFEHDSPTSNSAHTSLKALLTGCGITTDLETSYTARIMVCSVIPLAIMQIPNLFQFSSGLRSVTLVIALLITSIFLFLYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEKEIKEVLKVFDLDGDKKINKEEFVSGFTKWLDQTKHALKKQYFSRKSLKDIYQAFGPWIENKRKEREGKKQLIFEILRHVQSDVVGSLLTEDGKPDQHAIRGLFEKIDRNRDNFISQSELKELIMNIKFVKASMEVEEAVALVIEELDIDKDRTINEKEFVAGFEKWLSSTSAPAPVSDSESQEDMFQCRIPSILHVIYSSSLGHKC*







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