Glyma13g34700 - SoyBase

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Report for Sequence Feature Glyma13g34700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36237460
stop:	36241896
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g34700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15050	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 10 \| chr3:5066879-5067892 REVERSE LENGTH=259	SoyBase	E_val: 9.00E-79	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
UniRef100_B9S963	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9S963_RICCO	SoyBase	E_val: 1.00E-85	ISS
UniRef100_I1M327	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M327_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g34700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g34700

Paralog	Evidence	Comments
Glyma12g35711	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g34700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g271800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g34700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g34700

Limit To All Plant Sequences

>Glyma13g34700.3   sequence type=transcript   gene model=Glyma13g34700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACACAACAACTGGACATGATGACTACTACCTTCCCTCCTCACCTTTCTCTAGACTCCTAAACTTCCAAAGAGAGATCAAACATCTTATTCAGCGTGGTTGGGTTGTCACACACTATTATAGAACTTCTCTCTCTCTTTTTATGTGTTGTATTCCAATGTACCACGTCTCTTATCATTACCACCCACCACTCTCAATCCTCTCCAAGCAAAATCCTTGTGTTTTCTTCTCTCATCCTGGTTTGCTGCTGGCTGCTTTCCATTCTTACCTCAAGAGAAATAAGAGAATGGGTGCAAAGAAATGGTTTAAGATAATAGTCAAATTGAAGAAATCGAAGAAAGATAAATCCAAAGAAGAAAAGATCACTGATGAAAATTCAAACGAATACTCCAACGGGAAGCAGAGTACTCGTGAAGAGTCAAGTAGCATTCCCAATGAAGGTTTAATGATGGACAGGACAGTTCCTTCAAAGTTGATGGATGATATTGCAGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGCAAGAAGAACATTACACCATCTAAGGGGTGCAGAGAAATTCGAAGCTTTGATTCAAGACCACCTGGCCAGGGAGCAAACAGCAACTGCACTAAGCTATATACATTCATGGAGCAGAATACAAGAACAAATTAGAGTTCGAAGAATCTGTATGATAACAGAAGCCAGGATTAAGCAAAAGAAATTGGAAACCCAGTTAAAAATTGAGGCCAAGATTCATGAGCTCGAGGTGGAGTGGTGCAATGGTTCTGAAACCATGGAAGAAATAATTTCGAGGTTACATCAGCGAGAGGAAGCAGCAATTAAGCGAGAGCGAGCCATGGCGTATGCCTTCTCTCATCAGTGGAGACCAAACTGTAGCCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAAGAAAGTTGGGGTTGGAGCTGGACGGAGCGTTGGGTTGCGGCACGTCCCTGGGAAGTCCGGGTTCGAGTTCAGACCACCAAAACAAAGAATCTCAATGGCCAGGTGCAAAAAACCAAATTGGACAAGATGAACCACAACGAAAGCAAAGTAGCCTTGGCTAAACCTACCCTATCAAACGGGAAGGAAACTGGGAAAGGAAAGGAAAACGGTACTTCAGGGCTGTCAAAGAACAATGTATCCAAATAGCCCATTCTAATTTGATGGTTTAGGGTTTCTTCTTGCTCTTCTTTTGGAGTTTATTTTCCATATTTGGCTTCGTGAGAATCTACCATTTGGTGTGTACGTTACACTAGGAGACTTCACTTATTGTCTGCTTTTGCATGGTGTATATGATTATGAACATGAATCTCCTAGTTTTGGTTGAGACATGAGAGATGAGAGATGAGAATGGTATTTTATCATCCCTTTCATTCCAGGGGCAGTTAATCTTTACCGCAAGAAATTTTTATGCTTTACATATATTGGAAGTGCAAAAAAGCAAGGAAATTAAATGAAATATCCTCTCCTGTAAATGAGT

Coding sequences of Glyma13g34700

Limit To All Plant Sequences

>Glyma13g34700.2   sequence type=CDS   gene model=Glyma13g34700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACACAACAACTGGACATGATGACTACTACCTTCCCTCCTCACCTTTCTCTAGACTCCTAAACTTCCAAAGAGAGATCAAACATCTTATTCAGCGTGGTTGGGTTGTCACACACTATTATAGAACTTCTCTCTCTCTTTTTATGTGTTGTATTCCAATGTACCACGTCTCTTATCATTACCACCCACCACTCTCAATCCTCTCCAAGCAAAATCCTTGTGTTTTCTTCTCTCATCCTGGTTTGCTGCTGGCTGCTTTCCATTCTTACCTCAAGAGAAATAAGAGAATGGGTGCAAAGAAATGGTTTAAGATAATAGTCAAATTGAAGAAATCGAAGAAAGATAAATCCAAAGAAGAAAAGGAACAGATCACTGATGAAAATTCAAACGAATACTCCAACGGGAAGCAGAGTACTCGTGAAGAGTCAAGTAGCATTCCCAATGAAGGTTTAATGATGGACAGGACAGTTCCTTCAAAGTTGATGGATGATATTGCAGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGCAAGAAGAACATTACACCATCTAAGGGGTGCAGAGAAATTCGAAGCTTTGATTCAAGACCACCTGGCCAGGGAGCAAACAGCAACTGCACTAAGCTATATACATTCATGGAGCAGAATACAAGAACAAATTAGAGTTCGAAGAATCTGTATGATAACAGAAGCCAGGATTAAGCAAAAGAAATTGGAAACCCAGTTAAAAATTGAGGCCAAGATTCATGAGCTCGAGGTGGAGTGGTGCAATGGTTCTGAAACCATGGAAGAAATAATTTCGAGGTTACATCAGCGAGAGGAAGCAGCAATTAAGCGAGAGCGAGCCATGGCGTATGCCTTCTCTCATCAGTGGAGACCAAACTGTAGCCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAAGAAAGTTGGGGTTGGAGCTGGACGGAGCGTTGGGTTGCGGCACGTCCCTGGGAAGTCCGGGTTCGAGTTCAGACCACCAAAACAAAGAATCTCAATGGCCAGGTGCAAAAAACCAAATTGGACAAGATGAACCACAACGAAAGCAAAGTAGCCTTGGCTAAACCTACCCTATCAAACGGGAAGGAAACTGGGAAAGGAAAGGAAAACGGTACTTCAGGGCTGTCAAAGAACAATGTATCCAAATAG

>Glyma13g34700.3   sequence type=CDS   gene model=Glyma13g34700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACACAACAACTGGACATGATGACTACTACCTTCCCTCCTCACCTTTCTCTAGACTCCTAAACTTCCAAAGAGAGATCAAACATCTTATTCAGCGTGGTTGGGTTGTCACACACTATTATAGAACTTCTCTCTCTCTTTTTATGTGTTGTATTCCAATGTACCACGTCTCTTATCATTACCACCCACCACTCTCAATCCTCTCCAAGCAAAATCCTTGTGTTTTCTTCTCTCATCCTGGTTTGCTGCTGGCTGCTTTCCATTCTTACCTCAAGAGAAATAAGAGAATGGGTGCAAAGAAATGGTTTAAGATAATAGTCAAATTGAAGAAATCGAAGAAAGATAAATCCAAAGAAGAAAAGATCACTGATGAAAATTCAAACGAATACTCCAACGGGAAGCAGAGTACTCGTGAAGAGTCAAGTAGCATTCCCAATGAAGGTTTAATGATGGACAGGACAGTTCCTTCAAAGTTGATGGATGATATTGCAGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGCAAGAAGAACATTACACCATCTAAGGGGTGCAGAGAAATTCGAAGCTTTGATTCAAGACCACCTGGCCAGGGAGCAAACAGCAACTGCACTAAGCTATATACATTCATGGAGCAGAATACAAGAACAAATTAGAGTTCGAAGAATCTGTATGATAACAGAAGCCAGGATTAAGCAAAAGAAATTGGAAACCCAGTTAAAAATTGAGGCCAAGATTCATGAGCTCGAGGTGGAGTGGTGCAATGGTTCTGAAACCATGGAAGAAATAATTTCGAGGTTACATCAGCGAGAGGAAGCAGCAATTAAGCGAGAGCGAGCCATGGCGTATGCCTTCTCTCATCAGTGGAGACCAAACTGTAGCCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAAGAAAGTTGGGGTTGGAGCTGGACGGAGCGTTGGGTTGCGGCACGTCCCTGGGAAGTCCGGGTTCGAGTTCAGACCACCAAAACAAAGAATCTCAATGGCCAGGTGCAAAAAACCAAATTGGACAAGATGAACCACAACGAAAGCAAAGTAGCCTTGGCTAAACCTACCCTATCAAACGGGAAGGAAACTGGGAAAGGAAAGGAAAACGGTACTTCAGGGCTGTCAAAGAACAATGTATCCAAATAG

Predicted protein sequences of Glyma13g34700

Limit To All Plant Sequences

>Glyma13g34700.2   sequence type=predicted peptide   gene model=Glyma13g34700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NTTTGHDDYYLPSSPFSRLLNFQREIKHLIQRGWVVTHYYRTSLSLFMCCIPMYHVSYHYHPPLSILSKQNPCVFFSHPGLLLAAFHSYLKRNKRMGAKKWFKIIVKLKKSKKDKSKEEKEQITDENSNEYSNGKQSTREESSSIPNEGLMMDRTVPSKLMDDIAATRIQNAFRSFMARRTLHHLRGAEKFEALIQDHLAREQTATALSYIHSWSRIQEQIRVRRICMITEARIKQKKLETQLKIEAKIHELEVEWCNGSETMEEIISRLHQREEAAIKRERAMAYAFSHQWRPNCSQYFGQASYSLGKESWGWSWTERWVAARPWEVRVRVQTTKTKNLNGQVQKTKLDKMNHNESKVALAKPTLSNGKETGKGKENGTSGLSKNNVSK*

>Glyma13g34700.3   sequence type=predicted peptide   gene model=Glyma13g34700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NTTTGHDDYYLPSSPFSRLLNFQREIKHLIQRGWVVTHYYRTSLSLFMCCIPMYHVSYHYHPPLSILSKQNPCVFFSHPGLLLAAFHSYLKRNKRMGAKKWFKIIVKLKKSKKDKSKEEKITDENSNEYSNGKQSTREESSSIPNEGLMMDRTVPSKLMDDIAATRIQNAFRSFMARRTLHHLRGAEKFEALIQDHLAREQTATALSYIHSWSRIQEQIRVRRICMITEARIKQKKLETQLKIEAKIHELEVEWCNGSETMEEIISRLHQREEAAIKRERAMAYAFSHQWRPNCSQYFGQASYSLGKESWGWSWTERWVAARPWEVRVRVQTTKTKNLNGQVQKTKLDKMNHNESKVALAKPTLSNGKETGKGKENGTSGLSKNNVSK*

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