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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16900 | AT | Annotation by Michelle Graham. TAIR10: Alg9-like mannosyltransferase family | chr1:5779262-5782303 REVERSE LENGTH=570 | SoyBase | E_val: 0 | ISS |
| GO:0006490 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligosaccharide-lipid intermediate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030433 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER-associated protein catabolic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0031227 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0000026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-1,2-mannosyltransferase activity | SoyBase | N/A | ISS |
| GO:0004377 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| KOG2515 | KOG | Mannosyltransferase | JGI | ISS | |
| PTHR22760 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PF03901 | PFAM | Alg9-like mannosyltransferase family | JGI | ISS | |
| UniRef100_G7IH72 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1 2-mannosyltransferase ALG9 n=1 Tax=Medicago truncatula RepID=G7IH72_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M311 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M311_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g34570 not represented in the dataset |
Glyma13g34570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g35831 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g270500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34570.2 sequence type=transcript gene model=Glyma13g34570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAAGTTTCCTGCTGTGCTTACTTGTTGAATTGTTACAGATTAGATGAGCTTTTCATGTTACCATTGTCTTTTCCTGCTGTAGGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTGACTGATACTGTTCTCGTGGTAGCTCTTTCGAGAAAGTATGGAAAACGACTTGCTACGTATGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTTTATTTCTTCTGGATAAACCTGCTGCAGCAATTTCTGTTGCTGTTATTGGTGTAATACTTGGCTGGCCATTCTCAATCTTGGCTTTCCTTCCAGTGACACTATATTCTCTATCTAGAAAATTCAAACAGGCATTTATTGCTGCGGCTGTCACATCAATTCTTCTTCTTGCATTGTCAATAGTTATGGACTTTTACTACTATGGAAAATGGACTTCATCTGTCTTGAATCTTTTAATATATAATGTAGCTGGAGGCGGTGAAAGCCATCTGTATGGGACTGAAGGGCCTCTTTATTATCTGAGGAATGGATTTAACAATTTCAACTTTTGTTTTGTTCTTGCTCTGCTGTTCTTGGGGATTTTGCCTATTGCAAAGAAGAAATATGCACCAGACCTACTGATTGTGATATCACCTATATATATTTGGCTGGGGTTTATGTCTTTGCAGCCACACAAAGAAGAAAGGTTCCTGTATCCAGTATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTTCATCCCAGATTATGTGGGACAAGTTCGATGGATTGACGATGGATTCCGAGGTCTTCTTCCCATCCCATTTAATTCTACCCTAGGGGGGACTGCATCAGCACCACCATATTTCAACAATAAAAACATGGCATCAGACAAGCAATATCTCCATGATGTTGATGCTTGTACTTTCCTTGTCGAGCTGCAGCTAGAGCGGCCTTACCTGACTCGTGGAAGTGACTTGTCAACATGGGAGCCTATTGCTGCATTGCCTTATCTGGACAGGGAGCTTTCACCGGCACTGTATAGGTCCTTTTTCATTCCTTACCTTTGGCAAGAGAAGAATGTTTTTGGAATGTATAAGCTGCTTAAAAGAAGAACCACCTGATTTTCTATTTGGGCGGGGGATGGGGCATTAGATTGTCCTAGAATATGGTGGTGGATTAACAACAAAACCATTTTTGTTAGAGACAGTAAGCTTGTAGGATTTCCCTCATCTGTTGTTGAATATTTGATTTAGTTCTAATCTTCTTAGATTCCCCGAGTGTTGTCTGATGTCTTTTTCCCACGGAAGCATTCAGTTTATTAATCATCTACGGATTAAGTGTGTGTTGGGGTGAGTATTTGCAAACTGGATTTGGATAATCTTCATTTTGCAAAATTGTTTTGGTTAAAATTGAGTTTGAAGTGATT
>Glyma13g34570.1 sequence type=CDS gene model=Glyma13g34570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCCTCTCCACCGTGAGGCAGCGGCGCTCGGAGCCGTCTGATCCGTCGCCATCAGAACCGTACACGAAGCTGGACAAGCCCGAGAAAGCGGAGGAGAAAGACGAAGGGTTGGGGTGGGTTTTCCCGTTCGTGGCTCTTGGGTTATTGAGGTACATGAGTGCCACCTCCAACATCATCCACGATTGCGACGAGGTCTTCAATTACTGGGAGCCTCTTCATTTCCTTCTCTACAAATCTGGATTCCAGACATGGGAATACAGTTCACAGTTTGCTCTTCGGTCATATTTGTACCTTTTATTTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTGACTGATACTGTTCTCGTGGTAGCTCTTTCGAGAAAGTATGGAAAACGACTTGCTACGTATGCCCTTGCTATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTTTATTTCTTCTGGATAAACCTGCTGCAGCAATTTCTGTTGCTGTTATTGGTGTAATACTTGGCTGGCCATTCTCAATCTTGGCTTTCCTTCCAGTGACACTATATTCTCTATCTAGAAAATTCAAACAGGCATTTATTGCTGCGGCTGTCACATCAATTCTTCTTCTTGCATTGTCAATAGTTATGGACTTTTACTACTATGGAAAATGGACTTCATCTGTCTTGAATCTTTTAATATATAATGTAGCTGGAGGCGGTGAAAGCCATCTGTATGGGACTGAAGGGCCTCTTTATTATCTGAGGAATGGATTTAACAATTTCAACTTTTGTTTTGTTCTTGCTCTGCTGTTCTTGGGGATTTTGCCTATTGCAAAGAAGAAATATGCACCAGACCTACTGATTGTGATATCACCTATATATATTTGGCTGGGGTTTATGTCTTTGCAGCCACACAAAGAAGAAAGGTTCCTGTATCCAGTATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTTCATCCCAGATTATGTGGGACAAGTTCGATGGATTGACGATGGATTCCGAGGTCTTCTTCCCATCCCATTTAATTCTACCCTAGGGGGGACTGCATCAGCACCACCATATTTCAACAATAAAAACATGGCATCAGACAAGCAATATCTCCATGATGTTGATGCTTGTACTTTCCTTGTCGAGCTGCAGCTAGAGCGGCCTTACCTGACTCGTGGAAGTGACTTGTCAACATGGGAGCCTATTGCTGCATTGCCTTATCTGGACAGGGAGCTTTCACCGGCACTGTATAGGTCCTTTTTCATTCCTTACCTTTGGCAAGAGAAGAATGTTTTTGGAATGTATAAGCTGCTTAAAAGAAGAACCACCTGA >Glyma13g34570.2 sequence type=CDS gene model=Glyma13g34570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTGCTTAACCAGTGGCTGTTTCTTTGCTAGCACTAGTTTCTTGCCGAGTTCGTTTTCTATGTATGCAATATCTCTTGCATCAGGTTTATTTCTTCTGGATAAACCTGCTGCAGCAATTTCTGTTGCTGTTATTGGTGTAATACTTGGCTGGCCATTCTCAATCTTGGCTTTCCTTCCAGTGACACTATATTCTCTATCTAGAAAATTCAAACAGGCATTTATTGCTGCGGCTGTCACATCAATTCTTCTTCTTGCATTGTCAATAGTTATGGACTTTTACTACTATGGAAAATGGACTTCATCTGTCTTGAATCTTTTAATATATAATGTAGCTGGAGGCGGTGAAAGCCATCTGTATGGGACTGAAGGGCCTCTTTATTATCTGAGGAATGGATTTAACAATTTCAACTTTTGTTTTGTTCTTGCTCTGCTGTTCTTGGGGATTTTGCCTATTGCAAAGAAGAAATATGCACCAGACCTACTGATTGTGATATCACCTATATATATTTGGCTGGGGTTTATGTCTTTGCAGCCACACAAAGAAGAAAGGTTCCTGTATCCAGTATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTTTCATCCCAGATTATGTGGGACAAGTTCGATGGATTGACGATGGATTCCGAGGTCTTCTTCCCATCCCATTTAATTCTACCCTAGGGGGGACTGCATCAGCACCACCATATTTCAACAATAAAAACATGGCATCAGACAAGCAATATCTCCATGATGTTGATGCTTGTACTTTCCTTGTCGAGCTGCAGCTAGAGCGGCCTTACCTGACTCGTGGAAGTGACTTGTCAACATGGGAGCCTATTGCTGCATTGCCTTATCTGGACAGGGAGCTTTCACCGGCACTGTATAGGTCCTTTTTCATTCCTTACCTTTGGCAAGAGAAGAATGTTTTTGGAATGTATAAGCTGCTTAAAAGAAGAACCACCTGA
>Glyma13g34570.1 sequence type=predicted peptide gene model=Glyma13g34570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLSTVRQRRSEPSDPSPSEPYTKLDKPEKAEEKDEGLGWVFPFVALGLLRYMSATSNIIHDCDEVFNYWEPLHFLLYKSGFQTWEYSSQFALRSYLYLLFHEIVGRPASWLFSEDKVRVFYAVRFFLGLLSVLTDTVLVVALSRKYGKRLATYALAMLCLTSGCFFASTSFLPSSFSMYAISLASGLFLLDKPAAAISVAVIGVILGWPFSILAFLPVTLYSLSRKFKQAFIAAAVTSILLLALSIVMDFYYYGKWTSSVLNLLIYNVAGGGESHLYGTEGPLYYLRNGFNNFNFCFVLALLFLGILPIAKKKYAPDLLIVISPIYIWLGFMSLQPHKEERFLYPVYPLICVAASAVIESFPDLFRSKYNPYDRSIIVTVAKVMRPVVLSLILYASHARTFSLINGYSAPLEVYKILEHHDAENNSVLCVGSEWHRFPSSFFIPDYVGQVRWIDDGFRGLLPIPFNSTLGGTASAPPYFNNKNMASDKQYLHDVDACTFLVELQLERPYLTRGSDLSTWEPIAALPYLDRELSPALYRSFFIPYLWQEKNVFGMYKLLKRRTT* >Glyma13g34570.2 sequence type=predicted peptide gene model=Glyma13g34570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLCLTSGCFFASTSFLPSSFSMYAISLASGLFLLDKPAAAISVAVIGVILGWPFSILAFLPVTLYSLSRKFKQAFIAAAVTSILLLALSIVMDFYYYGKWTSSVLNLLIYNVAGGGESHLYGTEGPLYYLRNGFNNFNFCFVLALLFLGILPIAKKKYAPDLLIVISPIYIWLGFMSLQPHKEERFLYPVYPLICVAASAVIESFPDLFRSKYNPYDRSIIVTVAKVMRPVVLSLILYASHARTFSLINGYSAPLEVYKILEHHDAENNSVLCVGSEWHRFPSSFFIPDYVGQVRWIDDGFRGLLPIPFNSTLGGTASAPPYFNNKNMASDKQYLHDVDACTFLVELQLERPYLTRGSDLSTWEPIAALPYLDRELSPALYRSFFIPYLWQEKNVFGMYKLLKRRTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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