SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78850 | AT | Annotation by Michelle Graham. TAIR10: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr1:29642072-29643397 REVERSE LENGTH=441 | SoyBase | E_val: 2.00E-146 | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF317 | Panther | VASCULAR ENDOTHELIAL GROWTH FACTOR | JGI | ISS | |
| PF01453 | PFAM | D-mannose binding lectin | JGI | ISS | |
| UniRef100_I0B675 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Epidermis-specific secreted glycoprotein EP1-like protein n=1 Tax=Gossypium hirsutum RepID=I0B675_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M307 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M307_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g34520 not represented in the dataset |
Glyma13g34520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g270100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34520.1 sequence type=CDS gene model=Glyma13g34520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTGTGCCTCAACCAAAAATCTCCCTTCTAACCTTATTCTTCTTCTCTTCCTTCACCATCATTGCGCATGCAATTGTTCCTCAAAACGAAACCTTCAAATTTGAGAACTCAGGTGAACTTGGACCCTACATCGTTGAGTACGGTGCAGATTACAGAATGATAAGCATCTTCAACTCTCCATTCCAAGTTGGTTTCTACAACACCACCCCAAATGCCTTCACTCTAGCTTTGCGTGTAGGGCTCCAACGCTCGGAGCAGCTATTTCGTTGGGTTTGGGAGGCCAACAGGGCCAACCCAGTTGGAGAAAATGCCACTTTTTCACTTGGCACTGATGGGAACCTTGTGTTGGCAGATGCTGATGGCAGAATTGCATGGCAAACTAACACTGCCAACAAGGGTGTTGTGGCCTTCAGGCTTCTTTCAAATGGTAACATGGTCCTTCTTGATGCACAAGGCGGGTTCGTTTGGCAGAGTTTTGATCACCCCACAGATACCCTTTTGGTCGGTCAATATCTTAGAGCAAAAGGGCCATCCAAGTTGGTTAGTAGGCTCTCAGAGAAGGAAAATGTTGATGGGCCTTATAGTTTGGTCTTGGAGCCTAAAGGGTTAGCCTTGTACTACAAGAGCAAGAATTCTCCTAAGCCAATTCTCTATTGGTTTTCTTCTGATTGGTTCACCATTCAACGAGGGTCCTTGGAAAATGTCACCTTCACATCTGATCCAGAAACTTTTGAACTTGGATTTGATTACCATGTGGCCAATTCTTCATCTGGTGGCAATAGAATCCTTGGCAGGCCAGTGAACAATAGCACCATAACATATCTCAGGCTTGGAATTGATGGCAACATTAGGTTCTACACTTACTTCCTTGATGTGCGTGATGGTGTATGGCAAGTGACCTACACTCTATTTGATAGAGATTCTGATGAGAGTGAGTGCCAATTGCCTGAGAGATGTGGGAAATTTGGGTTGTGTGAAGATAACCAATGTGTGGCTTGTCCATTGGAAAATGGACTACTTGGTTGGAGCAACAATTGCACTGCCAAGGCTGTGACATCATGCAAGGCTAGTGATTTCCACTACTACAAAATTGAAGGAGTTGAGCATTACATGAGCAAATACACTACAGGGGATAGAGTGAGTGAGAGTACTTGTGGAAACAAATGCACCAAGGATTGCAAGTGTGTGGGTTATTTCTACCACAAGGAGAATTCAAGGTGTTGGGTAGCTTATGATCTTCAAACCCTTACTAGAGGGGCCAATTCCTCACATGTGGGGTATATTAAGGTGCCTAATAAGTAA
>Glyma13g34520.1 sequence type=predicted peptide gene model=Glyma13g34520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASVPQPKISLLTLFFFSSFTIIAHAIVPQNETFKFENSGELGPYIVEYGADYRMISIFNSPFQVGFYNTTPNAFTLALRVGLQRSEQLFRWVWEANRANPVGENATFSLGTDGNLVLADADGRIAWQTNTANKGVVAFRLLSNGNMVLLDAQGGFVWQSFDHPTDTLLVGQYLRAKGPSKLVSRLSEKENVDGPYSLVLEPKGLALYYKSKNSPKPILYWFSSDWFTIQRGSLENVTFTSDPETFELGFDYHVANSSSGGNRILGRPVNNSTITYLRLGIDGNIRFYTYFLDVRDGVWQVTYTLFDRDSDESECQLPERCGKFGLCEDNQCVACPLENGLLGWSNNCTAKAVTSCKASDFHYYKIEGVEHYMSKYTTGDRVSESTCGNKCTKDCKCVGYFYHKENSRCWVAYDLQTLTRGANSSHVGYIKVPNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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