Glyma13g34500 - SoyBase

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Report for Sequence Feature Glyma13g34500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36051557
stop:	36055113
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g34500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14930	AT	Annotation by Michelle Graham. TAIR10: Uroporphyrinogen decarboxylase \| chr3:5020675-5022577 FORWARD LENGTH=418	SoyBase	E_val: 0	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0006779	GO-bp	Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uroporphyrinogen decarboxylase activity	SoyBase	N/A	ISS
KOG2872	KOG	Uroporphyrinogen decarboxylase	JGI		ISS
PTHR21091	Panther	METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED	JGI		ISS
PTHR21091:SF2	Panther	UROPORPHYRINOGEN DECARBOXYLASE	JGI		ISS
PF01208	PFAM	Uroporphyrinogen decarboxylase (URO-D)	JGI		ISS
UniRef100_I1M304	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uroporphyrinogen decarboxylase n=1 Tax=Glycine max RepID=I1M304_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1M304	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uroporphyrinogen decarboxylase n=1 Tax=Glycine max RepID=I1M304_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g34500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g34500 not represented in the dataset	Glyma13g34500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g34500

Paralog	Evidence	Comments
Glyma12g35880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g34500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g269900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g34500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g34500

Limit To All Plant Sequences

>Glyma13g34500.3   sequence type=transcript   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGAAGTGCGTATTGGCGCGTGGTTCTCACCACCGGAGAAGCTCAGCCGCAGAGATAAGGAAACGAAACTCCACATAGGAATCACTTTCTTTCTTTGCTCTCCCCCAACCCAATGGCTACTTCCATTAACAGCAGTGCTCTGGGGTGGAAACATTCCTCCTTCTTCGTACAATCCAATAATGGCTTCAACGTTGCTTCGCCTCCTTTCAAACCAAAGCCGCCACGCTCCTCCAACTTTTCTCTCTATTGCTCTGCCGCCTCCTCTTCTTCTGATCCACTGTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCAGGAAGCCTTGGAAAGCTTTCAGACCAGATGGAGTCATTATCTTCTCAGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCTGTTATACATTCACCCATTCATTCTGAGGAAGGATTAAAGGTTTTGCATCCAATTGACCTGGACAGGCTTAAATTTGTTGGAGATTCACTTAAGATACTGCGCCGAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACATATACAACCATTAAGAGCATGTGTCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACACAAGCAATAGCTGATTATGCTATTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAATGCTGGTCAAAGTCATATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGTCTTCTTGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAAGTGTTCAGGGAAATGTGGACCCTGCCTACTTGTTCTCTCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTCGGACATGGTGTTCTTGTTGGCACGCCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGAAACACTTTTTCAAAACAATACCGCAAAAGACCCTAATCTTGTAACTTAAGGACAAATGCCATTACTATTGCTTCTTGTTTTACTTTGTCTCAGGAGTTAGTTCAAGCCCTTCTAGAAAGGAAGAGTGTAGGCTTAGTCCTTTATTCTTGTGCTTCTATTAGATGATCAAAGGTCTGAGGATGCACATTGCTGTACCGGCTTAGATGAAGTTTCGATTTTACATTCTGATGTATTTATAATTAATTATGATGAATTAATTTGGAGGATTCCTTCCATTTTGGTAAAATTTTCTTAGCATGGGGTGACACTCTGTCTTGTACTAATACTTTGTTTCAAAGAATTAATTAATTTATAATTTCCCTTTTAA

>Glyma13g34500.4   sequence type=transcript   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGTTCTCACCACCGGAGAAGCTCAGCCGCAGAGATAAGGAAACGAAACTCCACATAGGAATCACTTTCTTTCTTTGCTCTCCCCCAACCCAATGGCTACTTCCATTAACAGTGCTCTGGGGTGGAAACATTCCTCCTTCTTCGTACAATCCAATAATGGCTTCAACGTTGCTTCGCCTCCTTTCAAACCAAAGCCGCCACGCTCCTCCAACTTTTCTCTCTATTGCTCTGCCGCCTCCTCTTCTTCTGATCCACTGTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCAGGAAGCCTTGGAAAGCTTTCAGACCAGATGGAGTCATTATCTTCTCAGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCTGTTATACATTCACCCATTCATTCTGAGGAAGGATTAAAGGTTTTGCATCCAATTGACCTGGACAGGCTTAAATTTGTTGGAGATTCACTTAAGATACTGCGCCGAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACATATACAACCATTAAGAGCATGTGTCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACACAAGCAATAGCTGATTATGCTATTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAATGCTGGTCAAAGTCATATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGTCTTCTTGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAAGTGTTCAGGGAAATGTGGACCCTGCCTACTTGTTCTCTCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTCGGACATGGTGTTCTTGTTGGCACGCCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGAAACACTTTTTCAAAACAATACCGCAAAAGACCCTAATCTTGTAACTTAAGGACAAATGCCATTACTATTGCTTCTTGTTTTACTTTGTCTCAGGAGTTAGTTCAAGCCCTTCTAGAAAGGAAGAGTGTAGGCTTAGTCCTTTATTCTTGTGCTTCTATTAGATGATCAAAGGTCTGAGGATGCACATTGCTGTACCGGCTTAGATGAAGTTTCGATTTTACATTCTGATGTATTTATAATTAATTATGATGAATTAATTTGGAGGATTCCTTCCATTTTGGT

Coding sequences of Glyma13g34500

Limit To All Plant Sequences

>Glyma13g34500.1   sequence type=CDS   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTTCCATTAACAGCAGTGCTCTGGGGTGGAAACATTCCTCCTTCTTCGTACAATCCAATAATGGCTTCAACGTTGCTTCGCCTCCTTTCAAACCAAAGCCGCCACGCTCCTCCAACTTTTCTCTCTATTGCTCTGCCGCCTCCTCTTCTTCTGATCCACTGTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCAGGAAGGTACATGGCTGTTTACAAAAATCTTGCTGAGAAATATCCATCCTTCCGAGAGAGGTCAGAGACAACTGAACTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGACCAGATGGAGTCATTATCTTCTCAGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCTGTTATACATTCACCCATTCATTCTGAGGAAGGATTAAAGGTTTTGCATCCAATTGACCTGGACAGGCTTAAATTTGTTGGAGATTCACTTAAGATACTGCGCCGAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACATATACAACCATTAAGAGCATGTGTCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACACAAGCAATAGCTGATTATGCTATTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAATGCTGGTCAAAGTCATATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGTCTTCTTGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAAGTGTTCAGGGAAATGTGGACCCTGCCTACTTGTTCTCTCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTCGGACATGGTGTTCTTGTTGGCACGCCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGAAACACTTTTTCAAAACAATACCGCAAAAGACCCTAATCTTGTAACTTAA

>Glyma13g34500.3   sequence type=CDS   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGCGCCAGGCAGGAAGCCTTGGAAAGCTTTCAGACCAGATGGAGTCATTATCTTCTCAGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCTGTTATACATTCACCCATTCATTCTGAGGAAGGATTAAAGGTTTTGCATCCAATTGACCTGGACAGGCTTAAATTTGTTGGAGATTCACTTAAGATACTGCGCCGAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACATATACAACCATTAAGAGCATGTGTCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACACAAGCAATAGCTGATTATGCTATTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAATGCTGGTCAAAGTCATATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGTCTTCTTGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAAGTGTTCAGGGAAATGTGGACCCTGCCTACTTGTTCTCTCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTCGGACATGGTGTTCTTGTTGGCACGCCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGAAACACTTTTTCAAAACAATACCGCAAAAGACCCTAATCTTGTAACTTAA

>Glyma13g34500.4   sequence type=CDS   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGCGCCAGGCAGGAAGCCTTGGAAAGCTTTCAGACCAGATGGAGTCATTATCTTCTCAGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCTGTTATACATTCACCCATTCATTCTGAGGAAGGATTAAAGGTTTTGCATCCAATTGACCTGGACAGGCTTAAATTTGTTGGAGATTCACTTAAGATACTGCGCCGAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACATATACAACCATTAAGAGCATGTGTCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACACAAGCAATAGCTGATTATGCTATTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAATGCTGGTCAAAGTCATATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGTCTTCTTGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAAGTGTTCAGGGAAATGTGGACCCTGCCTACTTGTTCTCTCCTCTTGATGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTCGGACATGGTGTTCTTGTTGGCACGCCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGAAACACTTTTTCAAAACAATACCGCAAAAGACCCTAATCTTGTAACTTAA

Predicted protein sequences of Glyma13g34500

Limit To All Plant Sequences

>Glyma13g34500.1   sequence type=predicted peptide   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSINSSALGWKHSSFFVQSNNGFNVASPPFKPKPPRSSNFSLYCSAASSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAVYKNLAEKYPSFRERSETTELIVEISLQPWKAFRPDGVIIFSDILTPLPAFGVDFDIEEVRGPVIHSPIHSEEGLKVLHPIDLDRLKFVGDSLKILRREVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYAIFQVESGAHCIQIFDSWGGQLPPEMWECWSKSYIKEIVNLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGISVQGNVDPAYLFSPLDALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFETLFQNNTAKDPNLVT*

>Glyma13g34500.3   sequence type=predicted peptide   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDAPGRKPWKAFRPDGVIIFSDILTPLPAFGVDFDIEEVRGPVIHSPIHSEEGLKVLHPIDLDRLKFVGDSLKILRREVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYAIFQVESGAHCIQIFDSWGGQLPPEMWECWSKSYIKEIVNLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGISVQGNVDPAYLFSPLDALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFETLFQNNTAKDPNLVT*

>Glyma13g34500.4   sequence type=predicted peptide   gene model=Glyma13g34500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDAPGRKPWKAFRPDGVIIFSDILTPLPAFGVDFDIEEVRGPVIHSPIHSEEGLKVLHPIDLDRLKFVGDSLKILRREVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYAIFQVESGAHCIQIFDSWGGQLPPEMWECWSKSYIKEIVNLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGISVQGNVDPAYLFSPLDALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFETLFQNNTAKDPNLVT*

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