SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10865 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:3614789-3615308 REVERSE LENGTH=71 | SoyBase | E_val: 1.00E-38 | ISS |
| KOG4114 | KOG | Cytochrome c oxidase assembly protein PET191 | JGI | ISS | |
| PF10203 | PFAM | Cytochrome c oxidase assembly protein PET191 | JGI | ISS | |
| UniRef100_C1FDG2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase assembly protein, mitochondrial n=1 Tax=Micromonas sp. RCC299 RepID=C1FDG2_MICSR | SoyBase | E_val: 8.00E-16 | ISS |
| UniRef100_C6T299 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T299_SOYBN | SoyBase | E_val: 5.00E-43 | ISS |
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Glyma13g34480 not represented in the dataset |
Glyma13g34480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g35906 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g269700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34480.2 sequence type=transcript gene model=Glyma13g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTCAAACTTTTTTTTATTTGTTTCCTGTTAATTGATGTGGGTTTTTGGTTTTCTGTGTTTTAGAGAGGTGAAAGAGAAGTGGGTGAGGGACGATGTCCAAGTCTTGCAAAGGGTTGGCCATGGAGCTAGTCAAGTGTCTCAGTGAATCTGATTGTGTAAAGGTTGAGAAGAGATCATATAAGGAATGCGTTGGAGAGAAGAGTCCATGCATACCAAGTGAGTGTGCGGGACTCAGGGAAACCTATTTCAATTGCAAGAGAGGCCAGGTTGACATGAGAGCTAGGATTCGTGGAAACAAAGGCTATTAATGATCCCATCATACATTAGAAAAATTCTGTAGTTGTTCTGTCCAGTTGAGGTTCTTTCAGTTTTTAGCTCAAGATGAAGTCAGCAAAAGTAAAAGAAGAGGGTGAATAAGAGAAATTGGAGGCATTGCTAATTGTTTGATTTGATGGCATTGTAAGCTACGCATGCTCATGACAGCAACAATTTTGCTTTTAGAGAGATCATTAATATAAACTCTATCTAGTAATTAACATAGTGCATGTACATTCACCTACATTCTTGAATGACAGATTCCCTTTCCTCTTATGATAGTTCCACTAAGGGTGAGGCTTGTAGGATGCTCTAAGTGATAGTTTCAAGATTTGTTTGTCATAATTCATGCATCTCCATTATGTTATACAGTATGGTCCCTCTACTTACCTCTCCATGATTCCTGAACACTTCCTTTCTCAAGATAAAGAGGAATAAAAAGGGGTTTTGGACTATTGGCACTTCAATTTGTCAGTCCACACTCTAGTATTGACACTTAAGATTTTTGCTCAACTTTCCAATTTTGT
>Glyma13g34480.1 sequence type=CDS gene model=Glyma13g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAAGTCTTGCAAAGGGTTGGCCATGGAGCTAGTCAAGTGTCTCAGTGAATCTGATTGTGTAAAGGTTGAGAAGAGATCATATAAGGAATGCGTTGGAGAGAAGAGTCCATGCATACCAAGTGAGTGTGCGGGACTCAGGGAAACCTATTTCAATTGCAAGAGAGGCCAGGTTGACATGAGAGCTAGGATTCGTGGAAACAAAGGCTATTAA >Glyma13g34480.2 sequence type=CDS gene model=Glyma13g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAAGTCTTGCAAAGGGTTGGCCATGGAGCTAGTCAAGTGTCTCAGTGAATCTGATTGTGTAAAGGTTGAGAAGAGATCATATAAGGAATGCGTTGGAGAGAAGAGTCCATGCATACCAAGTGAGTGTGCGGGACTCAGGGAAACCTATTTCAATTGCAAGAGAGGCCAGGTTGACATGAGAGCTAGGATTCGTGGAAACAAAGGCTATTAA
>Glyma13g34480.1 sequence type=predicted peptide gene model=Glyma13g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKSCKGLAMELVKCLSESDCVKVEKRSYKECVGEKSPCIPSECAGLRETYFNCKRGQVDMRARIRGNKGY* >Glyma13g34480.2 sequence type=predicted peptide gene model=Glyma13g34480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKSCKGLAMELVKCLSESDCVKVEKRSYKECVGEKSPCIPSECAGLRETYFNCKRGQVDMRARIRGNKGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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