Glyma13g34460 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g34460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36025857
stop:	36027836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g34460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14880	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr3:5006565-5007689 FORWARD LENGTH=237	SoyBase	E_val: 1.00E-83	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q0GPF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: BZIP transcription factor bZIP132 n=1 Tax=Glycine max RepID=Q0GPF4_SOYBN	SoyBase	E_val: 3.00E-166	ISS
UniRef100_Q0GPF4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP132 n=1 Tax=Glycine max RepID=Q0GPF4_SOYBN	SoyBase	E_val: 3.00E-166	ISS

Expression Patterns of Glyma13g34460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g34460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g269500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g34460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g34460

Limit To All Plant Sequences

>Glyma13g34460.2   sequence type=CDS   gene model=Glyma13g34460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGTTGAAACCCTGAGAGAGTCACACGTAAACATGCACGCGCCATCACCCCAACCTCTCTCTGTTCTCTTCATCAACCCTCACTCATACATTACCATTAGCAACGGACAGAAGAGAGCAACAATGAACAACCCTAGTTCTCCCTCTCCCTGCGCGGCCTTCGCGGACTTCTACGAGCAATGGTTCGAGGAGCTTCAGTCCCTGATGCAGCAACTCAGGGGTGAGGGCAGAAAAGAGGAGGTGATGGAGAAGGTGATGTGGCACCACCAGAACTACTACGTGGCCAAGTCGGCGGCGGCGGAGAAGGACCCACTCAACGTGTTCCTATCTCCCTGGGCCACCACGCTGGAGCGCTCCCTCCACTGGATCACAGGGTGGCGCCCCACCACCGCGTTTCACCTCATCTACACCGAGTCCTCGCTCATGTTTGAGTCCCACATCATCGATATTCTCCAGGGACTCCGCACCGGCGACCTCGGCGATTTGTCACCCTCCCAGTTCCGCCGCGTCAGCGACATCCAATGCGACACTGTGAAGGAGGAGAATGCAATAACGGAGGAGCTATCAGAGTGGCAGGACAGTGTGAGCGAGATGATGGGCCCAGGTGCGAACATCAACGACAAGATCGGACGGCTGGTATGCATCATAAAGAAAGCAGATGATCTACGGCTGAGAACCTTGCGGAGTGTGGTGGGGCTACTGTCGCCGCAGCAGGCTATTGAGTTCTTGATTGCATCGGCGGAGTTGCTAGTTGGGATACGCGGTTGGGGATTGAATCATGACCGTCCACGTGGCAGATGA

Predicted protein sequences of Glyma13g34460

Limit To All Plant Sequences

>Glyma13g34460.2   sequence type=predicted peptide   gene model=Glyma13g34460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQVETLRESHVNMHAPSPQPLSVLFINPHSYITISNGQKRATMNNPSSPSPCAAFADFYEQWFEELQSLMQQLRGEGRKEEVMEKVMWHHQNYYVAKSAAAEKDPLNVFLSPWATTLERSLHWITGWRPTTAFHLIYTESSLMFESHIIDILQGLRTGDLGDLSPSQFRRVSDIQCDTVKEENAITEELSEWQDSVSEMMGPGANINDKIGRLVCIIKKADDLRLRTLRSVVGLLSPQQAIEFLIASAELLVGIRGWGLNHDRPRGR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain