SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78680 | AT | Annotation by Michelle Graham. TAIR10: gamma-glutamyl hydrolase 2 | chr1:29593933-29596037 FORWARD LENGTH=347 | SoyBase | E_val: 1.00E-169 | ISS |
| GO:0006541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamine metabolic process | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0046900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tetrahydrofolylpolyglutamate metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008242 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: omega peptidase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1559 | KOG | Gamma-glutamyl hydrolase | JGI | ISS | |
| PTHR11315 | Panther | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE | JGI | ISS | |
| PF07722 | PFAM | Peptidase C26 | JGI | ISS | |
| UniRef100_G7ITD9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gamma-glutamylhydrolase n=2 Tax=Medicago truncatula RepID=G7ITD9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M2Y6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2Y6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g34300 not represented in the dataset |
Glyma13g34300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g268000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34300.1 sequence type=CDS gene model=Glyma13g34300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAGCGACGCCGTTTGGGTCCTCTTCCACCTCGCCTTCTTCTCCCAATGCCTTCCCTCCGCCTGGGCCCACTCGGCGATCCTCCTCCCGGGTCAACTCGCCCGTGACTCACCGCAGAGCTGCCCCGCCCCTGACCCCAACCTCTACTACAAGCCAGTCATCGGAATCGTCAGCCATCCCGGCGACGGCGCCTCCGGCCGCCTCAGCAACGCCACCGGCGCCTCCTACATCGCCGCCTCCTATGTCAAATTCGTTGAGGCCGCCGGCGCCCGTGTCGTTCCCCTCATCTATACCGAGCCTCCGGAGAAGCTTCTCAAGAAGCTCGAATTGGTAAATGGGGTTCTCTTCACTGGTGGATGGGCTAAAAGTGGTTTATATTTTGAAACTGTCACAAAAATATTTAAGAAAATTTTAGAGAAGAATGATGCTGGAGATCATTTCCCATTATTTGCCACCTGCTTAGGCTTTGAACTCATAACGATGATCATAAGCCAGGACAATAATATTCTTGAAGAGTTTAGTGCATCAAATCAGGCAAGTACTCTTCAATTTGTGGAGAATGCAAATATCGGAGAAAGTGTCTTTCAAAGATTTCCTCCAGAGTTGTTAGGGAAGATGAGTACAGATTGTCTTGTCATGCAAAACCATCGTTATGGCATATCCCCTGGAAAGCTTCTGAATAATCCAAAGTTGTCTAGTTTTTTTGAGATCTTGACAACTTGCACAGATGAAGATGATAAGGTTTATGTTTCCACTGTACGTTCTCAAAACTATCCTGTGACTGGCTTCCAATGGCATCCAGAGAAAAATGCCTTTGAATGGGGTTCACCAAGAATTCCACACACGGAGGATGCCATTCAGATAACCCAGTATGTTGCAAATTTTTTGGTCAGTGAAGCTAGGAAATCCTTAAACAGACCAGTTGCTCAAGAGTTGCTAGACAATCTCATTTACAATTACAGTCCAACTTATTGTGGGAAGGCTGGGAAAGGATATGATGAAGTTTATATATTTGCGCAAGCCTGA
>Glyma13g34300.1 sequence type=predicted peptide gene model=Glyma13g34300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSDAVWVLFHLAFFSQCLPSAWAHSAILLPGQLARDSPQSCPAPDPNLYYKPVIGIVSHPGDGASGRLSNATGASYIAASYVKFVEAAGARVVPLIYTEPPEKLLKKLELVNGVLFTGGWAKSGLYFETVTKIFKKILEKNDAGDHFPLFATCLGFELITMIISQDNNILEEFSASNQASTLQFVENANIGESVFQRFPPELLGKMSTDCLVMQNHRYGISPGKLLNNPKLSSFFEILTTCTDEDDKVYVSTVRSQNYPVTGFQWHPEKNAFEWGSPRIPHTEDAIQITQYVANFLVSEARKSLNRPVAQELLDNLIYNYSPTYCGKAGKGYDEVYIFAQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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