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Report for Sequence Feature Glyma13g34281

Feature Type:gene_model
Chromosome:Gm13
Start:35889478
stop:35896451
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g34281
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56400AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 70 | chr3:20909082-20910409 REVERSE LENGTH=294 SoyBaseE_val: 8.00E-33ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009625GO-bp Annotation by Michelle Graham. GO Biological Process: response to insect SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009759GO-bp Annotation by Michelle Graham. GO Biological Process: indole glucosinolate biosynthetic process SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009864GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010120GO-bp Annotation by Michelle Graham. GO Biological Process: camalexin biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0045088GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:1900056GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of leaf senescence SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G7IR30UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IR30_MEDTR SoyBaseE_val: 1.00E-68ISS
UniRef100_I1M2Y4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M2Y4_SOYBN SoyBaseE_val: 3.00E-112ISS

Proteins Associated with Glyma13g34281
LocusGene SymbolProtein Name
WRKY138 WRKY Transcription Factor

Expression Patterns of Glyma13g34281
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g34281 not represented in the dataset
Glyma13g34281 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g34281 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g267700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g34281
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g34281
>Glyma13g34281.1   sequence type=CDS   gene model=Glyma13g34281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATCAGCCTTCAAATGGAAAAAGGGCAATGGAAGAAGAGCTGATCAAAGGGTGTGAGACAGCAAACCAGTTACTTGAAGTACTTGTTCATAAATCCAACACTACTCATGAAGATGTAGAACTAGAAGGGTCAGTGCAACCTTTGGTTGAAGATCTTGTGCGCAAGGTGTTGTGTTCATTCACAAATACCCTTTTGCTATTGAACACTAATAATATTAATGATGTCTCCAAATACACTATCAAAGATGCCCCTTCGTCCGTGAAATGTCCAGAGACTCAGGGTACGGATGAGGCTTGCAAGAGTTTCTTCCACGCTGAAAAACGAAGAGGGTGCTACAAGAGAAAATCAAGTGCACCAACATGGGAGACGAACAGCTCAATTCTGCTGGAAGATGGCTATGCATGGAGAAAATATGGACAAAAGATAACACTGAATGCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAGTATGATCAGGGTTGTCCAGCAACCAAACAGGTTCAGAGAACTCAAGAGGACCCTCCATTGTACCGGACAACATATTATGGACATCACAATTGCAAAAGCTCTTTAAGTCCTGAGATAATGATGGAACCAGCTTTTTCTTCTGGCTCTTCTATGATCCTTAGCTTCACTAGCACCCTCACAAGCAAAGAAGGATACCCATTTTCATCATCACTTTCTTCATCCACAAAACTGGAGCCTATGGAAGTGATTCAGGATGACCATATCGTTCAGAACCAATTATCCTCATCAGATTACCTCCTGTTATCTGACTATGGACTTGATTTCAATTATTAG
Predicted protein sequences of Glyma13g34281
>Glyma13g34281.1   sequence type=predicted peptide   gene model=Glyma13g34281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENQPSNGKRAMEEELIKGCETANQLLEVLVHKSNTTHEDVELEGSVQPLVEDLVRKVLCSFTNTLLLLNTNNINDVSKYTIKDAPSSVKCPETQGTDEACKSFFHAEKRRGCYKRKSSAPTWETNSSILLEDGYAWRKYGQKITLNAKYLRSYYRCTHKYDQGCPATKQVQRTQEDPPLYRTTYYGHHNCKSSLSPEIMMEPAFSSGSSMILSFTSTLTSKEGYPFSSSLSSSTKLEPMEVIQDDHIVQNQLSSSDYLLLSDYGLDFNY*






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