SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14840 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase | chr3:4988271-4993891 FORWARD LENGTH=1020 | SoyBase | E_val: 1.00E-60 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF692 | Panther | JGI | ISS | ||
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7IJE4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like serine/threonine kinase n=1 Tax=Medicago truncatula RepID=G7IJE4_MEDTR | SoyBase | E_val: 7.00E-81 | ISS |
| UniRef100_I1M2W9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M2W9_SOYBN | SoyBase | E_val: 2.00E-143 | ISS |
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Glyma13g34073 not represented in the dataset |
Glyma13g34073 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g34073.1 sequence type=CDS gene model=Glyma13g34073 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCCGCCCATCCTTTATCTTTACGAAACTTTTCCAAAGTTCTCCTCCTTTAATATCCGTAATCTTCAGTTTGCTTTCATCTCTTTCGACCAGTATCTTTTATGAAATTGATCTGAACTTCTTTTCCATTCTTAATTTATCTTCAATCAGCATGAAGAAGATCACTTCCTCTCAATTTCTTCTCTTCCTTTCACTCCTTGCTTTATGGTTCACATCGATTGCTTTTGGAGCTGATACCACTCACCCAGAAGAAGTGCAAGCTCTGAAAGATATGGGCAAGACGCTTGGTAAGAAGGAATGGGACACTGACATAGATCCATGCTCAGGACAACCTCCCTGGTTCACATCTAAGGAGAACAACAATGTCACTTGCAATTGCACTATCCCCGGTGAAAACTTCTGCCATGTTGTAATAATATTGCTGAAATCACAAAATCTTCGAGGCATGCTCCCACGCGAACTGATAAGGTTACCTTACCTTGAAGAAATTGACCTCACAAAAAACTACCTTAACGGTACTATACCTACCCAATGGGGCTCCTCCAATCTTCGCAGCATTTCTCTTTATGGAAATCGACTAACTGGTCCAATCCCAAAAGAGATAGCAAACATCACCAACCTCCAAAATTTGGTTTTGGAATTCAATCAATTTTCTGGAAATCTACCTCCAGAACTTGGGAACCTTCCAAGCATTCAGAAATTGCATCTTACCTCTAACAACTTTACCGGAGAGCTTCCTGAAACTTTGGCTAAACTTACAACATTGACAGAACTCCGACTTAGTGACCATCACTTCTCTGGAAAGATTCCTGATTCATTCAAAGATGGACCGATCTGG
>Glyma13g34073.1 sequence type=predicted peptide gene model=Glyma13g34073 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high RRPSFIFTKLFQSSPPLISVIFSLLSSLSTSIFYEIDLNFFSILNLSSISMKKITSSQFLLFLSLLALWFTSIAFGADTTHPEEVQALKDMGKTLGKKEWDTDIDPCSGQPPWFTSKENNNVTCNCTIPGENFCHVVIILLKSQNLRGMLPRELIRLPYLEEIDLTKNYLNGTIPTQWGSSNLRSISLYGNRLTGPIPKEIANITNLQNLVLEFNQFSGNLPPELGNLPSIQKLHLTSNNFTGELPETLAKLTTLTELRLSDHHFSGKIPDSFKDGPIW
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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