SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78590 | AT | Annotation by Michelle Graham. TAIR10: NAD(H) kinase 3 | chr1:29564343-29566128 FORWARD LENGTH=317 | SoyBase | E_val: 2.00E-130 | ISS |
| GO:0006741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: NADP biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyridine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003951 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD+ kinase activity | SoyBase | N/A | ISS |
| GO:0042736 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH kinase activity | SoyBase | N/A | ISS |
| KOG4180 | KOG | Predicted kinase | JGI | ISS | |
| PTHR20275 | Panther | POLY(P)/ATP NAD KINASE | JGI | ISS | |
| PF01513 | PFAM | ATP-NAD kinase | JGI | ISS | |
| UniRef100_B9T1K4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH kinase, putative n=1 Tax=Ricinus communis RepID=B9T1K4_RICCO | SoyBase | E_val: 4.00E-136 | ISS |
| UniRef100_I1M2W0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2W0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g33980 not represented in the dataset |
Glyma13g33980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g36270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g264900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g33980.1 sequence type=CDS gene model=Glyma13g33980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCCTAAAGAGACTGTTACTGCTACTAAAACCCTTAAGTGTATCTTCACCACCTTCCCACATCAACCCTCAGATCTTACAGTTCTTGGAGAATAGGAGAAAGGTGCACCATGATGCAATAAACTTTTGTCAAGCCATTCTGCAAAAAAAGTCAATTGAATGGAAAGCTGTGCACCGTAACAATTTGTCACAGCCCATCAATGATGTTGACCTAGTTGTTACAGTTGGTGGTGATGGAACTCTTCTGCAGGCCAGCCATTTAATGGATGACAAAATTCCTGTTCTTGGAGTGAATTCTGACCCTACACAGATTGATGAGGTGGAAGAGTTCGGCAGTGAGTTTGATGCTCACAGAAGCACGGGCCATCTTTGTGCTGCTACTGTTGAAAACTTTGAACAAGTTTTAGACAGTATACTTGAAGGTCAAATTGTTCCTTCTGAGCTAACGAGGATCATGATGTCTGTGAATGGACTAGACTTGTCAACATATGCTCTCAATGATATCTTAATTGCGCATCCATGTCCTGCTTCAGTTTCTAGGTTCTCCTTCAGAATCAAAGAGGGTGACCAGCCATGTTCTCCTCTTGTGAACTGCAGATCAAGTGGTCTAAGAGTTTCAACAGCCACTGGTTCAACTGCTGCAATGCAATCAGCAGGTGGATTTCCAATGCCCATTTTATCTCAGGATCTCCAATACATGTTAAGAGAACCTATTTCACTGGGGGCAACCTCAAACTATATGCATGGGTTGATCAAACGTAACCAGACAATAGTGGCCACATGGACTTGTAGAAAAGGTGTGATATATATTGATGGTTCTCATGTCAATTATACTTTCAAAGATGGGGATATCATTGCCATATCTTCCAAAGCACCGGTTCTGAAAGTTCTCTTGCCTCATAAGTTTTTATAG
>Glyma13g33980.1 sequence type=predicted peptide gene model=Glyma13g33980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILKRLLLLLKPLSVSSPPSHINPQILQFLENRRKVHHDAINFCQAILQKKSIEWKAVHRNNLSQPINDVDLVVTVGGDGTLLQASHLMDDKIPVLGVNSDPTQIDEVEEFGSEFDAHRSTGHLCAATVENFEQVLDSILEGQIVPSELTRIMMSVNGLDLSTYALNDILIAHPCPASVSRFSFRIKEGDQPCSPLVNCRSSGLRVSTATGSTAAMQSAGGFPMPILSQDLQYMLREPISLGATSNYMHGLIKRNQTIVATWTCRKGVIYIDGSHVNYTFKDGDIIAISSKAPVLKVLLPHKFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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