SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78570 | AT | Annotation by Michelle Graham. TAIR10: rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669 | SoyBase | E_val: 0 | ISS |
| GO:0009225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0010253 | GO-bp | Annotation by Michelle Graham. GO Biological Process: UDP-rhamnose biosynthetic process | SoyBase | N/A | ISS |
| GO:0010315 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin efflux | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0045226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: extracellular polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0051555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dTDP-4-dehydrorhamnose reductase activity | SoyBase | N/A | ISS |
| GO:0010280 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-L-rhamnose synthase activity | SoyBase | N/A | ISS |
| GO:0050377 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4,6-dehydratase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG0747 | KOG | Putative NAD+-dependent epimerases | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF2 | Panther | HYDROXYSTEROID DEHYDROGENASE | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| PF04321 | PFAM | RmlD substrate binding domain | JGI | ISS | |
| UniRef100_D2D336 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rhamnose synthase n=1 Tax=Gossypium hirsutum RepID=D2D336_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M2V7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2V7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g33960 not represented in the dataset |
Glyma13g33960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g36290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g264500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g33960.1 sequence type=CDS gene model=Glyma13g33960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACGCATACGCCAAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAATCGGCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAGCTTGATTACTGTTCAAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCTAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGATCTTGTCAACTACCTTCTCATCACTGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCCTTTGGCAACAGCTTTGAGTTCACCAAGAACAACATTTATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTACGGAGAGACAGATGAAGATGCTGTTGTTGGAAACCATGAGGCTTCTCAGTTACTCCCCACGAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGCAGGTCGTATGGGTTACCTGTGATCACGACTCGTGGGAACAATGTTTATGGGCCCAATCAGTTCCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCTATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAAGCTTTTGAACTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATGTGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTTAAGATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGATTGGAGAGACATTTTGATGGATCTGATGAAGAAAAACCTGCATCATATGTCTCAACTAATACTCGAATGGTGGTTCCAACATCCAAGAATGTTAACTCCTCTCAGAAACCTGCTCTCAAGTTCTTGATCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAGCAAGGAATTCCCTATGAATATGGAAAAGGACGCCTGGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCTGGAGTAACTGGCAGACCCAATGTCGATTGGTGTGAATCTCATAAGACGGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGACTCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGATGCAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAGACCCAACTTCTTTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAGGAGCTCTTAAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCACGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTGGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCTATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTTGAGATGTACAGGGATTACATCGATCCAAGCTTCAAGTGGGCTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTGCACGGAGCAACAACGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA
>Glyma13g33960.1 sequence type=predicted peptide gene model=Glyma13g33960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFELILHKGEVGHVYNIGTKKERRVIDVAKDMCRLFKMDPETSIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPASYVSTNTRMVVPTSKNVNSSQKPALKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGLLMINYATGCIFEYDAAHPEGSGIGFKEEDRPNFFGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWANFNLEEQAKVIIAARSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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