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Report for Sequence Feature Glyma13g33600

Feature Type:gene_model
Chromosome:Gm13
Start:35396066
stop:35399843
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g33600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17080AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L18ae family | chr1:5840458-5841536 REVERSE LENGTH=154 SoyBaseE_val: 6.00E-56ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10052Panther 60S RIBOSOMAL PROTEIN L18A JGI ISS
PTHR10052:SF2Panther 60S RIBOSOMAL PROTEIN L18A, PLANT JGI ISS
UniRef100_I1M2S8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2S8_SOYBN SoyBaseE_val: 9.00E-110ISS
UniRef100_I3NMN2UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L18aA n=1 Tax=Hevea brasiliensis RepID=I3NMN2_HEVBR SoyBaseE_val: 4.00E-64ISS

Expression Patterns of Glyma13g33600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g33600 not represented in the dataset
Glyma13g33600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g33600
ParalogEvidenceComments
Glyma15g39350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g33600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g261500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g33600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g33600
>Glyma13g33600.1   sequence type=CDS   gene model=Glyma13g33600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGACGAAGACAAACCCAAAGCCTTCTCCGGCGGCCATCACAACCACCCTCCGCCGCAGCCACAACCCTTCCCCGCCGCCCAGTATGGCACCTTCCAAGGCGTCGCCAACTACCCTCCGCCGCAGCCGCACCCCGCCATCGGCTTCCCTCACCCGGTTCCGCCGCCCGGCGCCGTCGACTCCTCCGCCCCTCCTCCGCCCTACTACCCGGGCTACCAAGCCGTTCCCGGTTATGCAGTTGCTGAAGGAAGACCTGTAAGAGAACGCCGCCTTGGTTGCTGTGGCCTTGGATGCGGCTGGTGTCTGTTTATATTAGGCTTCTTTCTTGCTGGCATTCCGTGGTATGTTGGGGCAATAATTATGCTTTGTTCCAGAGTAGACTATCGAGAGAAACCCGGATATATTGCTTGTGTAGTTGCTGCTGTTCTGGGCACAATTGCAATTATTCTTGGTGTGACAGAGGGAGTAGATGACTGGTAA
Predicted protein sequences of Glyma13g33600
>Glyma13g33600.1   sequence type=predicted peptide   gene model=Glyma13g33600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDEDKPKAFSGGHHNHPPPQPQPFPAAQYGTFQGVANYPPPQPHPAIGFPHPVPPPGAVDSSAPPPPYYPGYQAVPGYAVAEGRPVRERRLGCCGLGCGWCLFILGFFLAGIPWYVGAIIMLCSRVDYREKPGYIACVVAAVLGTIAIILGVTEGVDDW*






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