Glyma13g33590 - SoyBase

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Report for Sequence Feature Glyma13g33590

Feature Type:	gene_model
Chromosome:	Gm13
Start:	35390553
stop:	35394847
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g33590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53580	AT	Annotation by Michelle Graham. TAIR10: glyoxalase II 3 \| chr1:19991542-19993250 REVERSE LENGTH=294	SoyBase	E_val: 2.00E-155	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004416	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroxyacylglutathione hydrolase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
GO:0050313	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfur dioxygenase activity	SoyBase	N/A	ISS
KOG0814	KOG	Glyoxylase	JGI		ISS
PTHR11935	Panther	BETA LACTAMASE DOMAIN	JGI		ISS
PTHR11935:SF11	Panther	GLYOXALASE II	JGI		ISS
PF00753	PFAM	Metallo-beta-lactamase superfamily	JGI		ISS
UniRef100_I1M2S7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M2S7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C8L4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyacylglutathione hydrolase 3, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=GLO2O_ARATH	SoyBase	E_val: 9.00E-153	ISS

Expression Patterns of Glyma13g33590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g33590

Paralog	Evidence	Comments
Glyma15g39370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g33590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g261400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g33590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g33590

Limit To All Plant Sequences

>Glyma13g33590.1   sequence type=CDS   gene model=Glyma13g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATAGCTACAAAACTGTATGCATCCAACGTGACATCCACACTCAACTCAAAAACCAATTCCAATAATGGCGACCTTATCTATGTCATCTTGATCGTAATCCCCGTCATCAAACTCTTTCTTTATTCTACGATTCACAATCAAAACCCAACAACTTCAACTCTCCAATCTCTATCCTCAATTCAACCCTTTTGGTGGCAACTTCTATTTATGCTACAAAAAATGCTGCGATTGCACTTCACCACCGCACTCTCTCACTTTGCTTCCAAGGCCTCACCTTTTCCTCTCACACCCGTTTCCGTTACCGTTTCCAGAGCTATTGTTTGCAACAACCCCACCAGGTTCAGATCGCAAATGGGTTCTTTCTCCACTTCCTCTTCCTCTTCCTCCAAACTCTTGTTCCGCCAGCTTTTTGAGAAGGAATCTTCCACCTACACTTACCTTCTCGCTGATGCCTCGCACCCAGAAAAACCTGCACTTCTGATTGACCCAGTTGATAGGACAGTAGACAGGGACTTGTCGATCATTGAGCAACTGGGGTTGAAGCTTGTGTATGCCATGAACACACATGTGCATGCGGATCATGTCACTGGGACTGGCCTTATCAAGAGCAAAGTTCCTTCTGTAAAATCTGTTATTTCAAAAGCAAGTGGTGCAACGGCAGATCTTTATGTGGAGCCAGGTGATAAGGTCCAAATTGGTGATCTTTTTCTAGAGGTTCGTGCAACTCCTGGTCATACCAAAGGTTGTGTTACCTATGTTACTGGAGATGCACCTGATCAACCTCAACCTAGGATGGCATTCACTGGAGATACCCTATTAATACGGGGATGTGGTAGGACAGATTTTCAGGGTGGGAGTTCAGAGCAGCTTTACAAATCAATCCATTCACAGATTTTAACACTGCCCAAGAGTACGTTAATCTATCCAGCTCATGACTACAAAGGATTCACTGTGAGCACTGTTGGAGAGGAGCTGCAAAACAATCCACGCATAACAAAGGATGAGGAAACTTTCAAGAACATCATGGGAAATCTTAACCTGTCATATCCTAAAATGATTGACATAGCTGTCCCAGCTAATATGGTTTGCGGAATCCAATCCAATCCAAAGCAAGCTGAGGCTTCATAA

Predicted protein sequences of Glyma13g33590

Limit To All Plant Sequences

>Glyma13g33590.1   sequence type=predicted peptide   gene model=Glyma13g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIATKLYASNVTSTLNSKTNSNNGDLIYVILIVIPVIKLFLYSTIHNQNPTTSTLQSLSSIQPFWWQLLFMLQKMLRLHFTTALSHFASKASPFPLTPVSVTVSRAIVCNNPTRFRSQMGSFSTSSSSSSKLLFRQLFEKESSTYTYLLADASHPEKPALLIDPVDRTVDRDLSIIEQLGLKLVYAMNTHVHADHVTGTGLIKSKVPSVKSVISKASGATADLYVEPGDKVQIGDLFLEVRATPGHTKGCVTYVTGDAPDQPQPRMAFTGDTLLIRGCGRTDFQGGSSEQLYKSIHSQILTLPKSTLIYPAHDYKGFTVSTVGEELQNNPRITKDEETFKNIMGNLNLSYPKMIDIAVPANMVCGIQSNPKQAEAS*

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