Report for Sequence Feature Glyma13g33580
Feature Type: gene_model
Chromosome: Gm13
Start: 35372318
stop: 35380216
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g33580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G53590 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:19996556-20000127 FORWARD LENGTH=751
SoyBase E_val: 0 ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR16122 Panther
MCTP-RELATED
JGI ISS
PTHR16122:SF13 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
UniRef100_D7L359 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Integral membrane single C2 domain protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L359_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI000233B51B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B51B related cluster n=1 Tax=unknown RepID=UPI000233B51B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g33580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g33580
Paralog Evidence Comments
Glyma15g39380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g33580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g261200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g33580
Coding sequences of Glyma13g33580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g33580.1 sequence type=CDS gene model=Glyma13g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTTTATGGAAGTTTCAATCTTGCATCATGCGGGGATCGTGCTTATTGGGCTATGGATTCTCTCTGCATTCAACTGGTGTCACACGGTTGCTTATTTTGTGGCTTTGATCTATCTTTTTCTGGTTCATGAACGTTATGTCACGAGGTTGCGGAAGAAGTTGCAGTTTGAGGAGAGGAAGCAAGCTAATCAAAGAAGGGTGCTTTCAGATTCTGAAACAGTCCGGTGGTTGAACCATGCAGTTGAAAACATATGGCCAATATGTATGGAAAACATTGTCTCTCAGAAGATATTATTCCCTATCATACCGTGGTTCTTAGAGAAGTACAAACCTTGGACTGCTAAAGAAGCTGTCGTTCAGCACCTATACATGGGAAGAAACCCACCTTTGATCACTGAAGTTAGGGTTCTTCGCCAGAGTGATGATGATCACTTGGTTCTGGAGTTAGGAATGAATTTTCTCACAGCTGATGATATGAGTGCAATACTTGCTGTGAAACTAAGAAAAAGATTGGGCTTTGGAATGTGGGCAAAACTGCACATCACGGGAATGCATGTTGAAGGGAAGGTCTTAGTTGGGGTGAAGTTTCTCCCAACATGGCCTTTTATTGGCCGTTTGCGTGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTATGTTTACTCATGGGCTTGATGTGACTGAACTTCCAGGCATTGCTGGGTGGCTAGATAAGCTGCTGTCTATTGCTTTTGAACAGACCCTTGTTGAGCCCAACATGCTGGTTGTTGATGTTGAGAAATTTGTTTCACCACAACAAGAGTCTTGGTTCAAAGTGAATGAGAAGGAGCCTGTTGCTTATGCAAAAGTGGAAGTTATTGAAGCATCTGAGATGAAGCCATCTGATCTAAATGGATTAGCGGATCCTTATGTGAAAGGTCAAATGGGTGTATACAGATTCAGGACAAAGATACAAAGGAAAACACTTACTCCAAAATGGCACGAGGAATTTAAAGTTCCCATCATAACATGGGAGTCTGATAACGTGCTGGTTATTGCAGTTCGTGACAAGGACCATTTCTATGATGATATCCTTGGGGACTGTACCGTGAACATCAATGAATTTAGGGATGGGCAAAGACATGATATGTGGCTGTCACTTAAGAACATGAAAATGGGGAGGTTGCGTTTGGCAATAACTATTCTTGAAGATAATGGAAAGGGAGTTGATACTACTACACGTGACCAGGAAACAATGGACTTTGAAGAACGAAAAATCTCCTTTGAAGCAAATGAGACTACTGATAATAGTTCCTTCTCACCTGTTCCACCTGAAAAATCTGAGAAGTTGGCAGATAACTATGAGCCTATAGACATCGACGGGCAAAAAGAGACAGGAGTTTGGGTTCATCACCCAGGAAGTGAAGTTTCCCAAAGGTGGGAGCCTAGGAAAGGGAAGAGTCGGCGCCTTGATACAGAAATTCATGGGGAGCCTAATGATTCAGTTGGCAGTGGTAATTCAACTGTATCAGGATCCTTGAACAATGACAGCAGCAGTCCTGATAATAATCCTGAAGAAAAGCATCGAATGAGAACGGTTAGGAAGGGCCTTCACAAGATTGGTTCAGTATTCCACCGGAGTAAAAGAAGGGAGGGTTTTTCAGGTTCTGTTGATGAGGAGATTCTGTCTCCACATGATAACATTAGGTCAGAGAATGCTAAGGGGATGATTGCTGTGAAGTTTGTCATGGACGAGAACATTTCCGGCTTTCAAACTGGTAAGGTTCAGGCAGAAGGGGGATCAACAGAAGGGAGTGGTCCTGAGAGCCCTGCCAGTGCCAAGGGAAATGTGAAGGATATGGCGAAGAATATTTTTAAACATGCAGAAAAATCGGCTCGTGGCTTGAGGCACGTTCTTTCTTGTAAATCAAGGAAATTGAAATTTAAAGGTGAGTCTCCAACAGTTCCAGAAAGAGAACATGAATCTGACTCTTCTGACGAGGAATCTATTGCAGCTCAATCTCCCATAGATGTAATAAGAACTCCAGTTGGTTCTCATGCTGTGGTCTCAGGTAGCAATGGTTCCCCTGGTTCTGGGGTGAACGTGGTTCAAATAGTTCCATCAAACACTAATTTGGACAATGAAGCCACAGCTAAAATCACGAATGAAAAAGATGACCCTGAAAATGCATGCTCCCCTGACAGGTCTAGCCAAGAAGTTGTTAAATCTGCTGAAGTGGAGCATGATAAAGAGGAAATGGGGGCACAGATAAAAGAGATTCTATCGGTTTGTCCTACTGAAGAAAGTTTCAAGTAG
Predicted protein sequences of Glyma13g33580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g33580.1 sequence type=predicted peptide gene model=Glyma13g33580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDFMEVSILHHAGIVLIGLWILSAFNWCHTVAYFVALIYLFLVHERYVTRLRKKLQFEERKQANQRRVLSDSETVRWLNHAVENIWPICMENIVSQKILFPIIPWFLEKYKPWTAKEAVVQHLYMGRNPPLITEVRVLRQSDDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKLHITGMHVEGKVLVGVKFLPTWPFIGRLRVCFVEPPYFQMTVKPMFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVNEKEPVAYAKVEVIEASEMKPSDLNGLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVPIITWESDNVLVIAVRDKDHFYDDILGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAITILEDNGKGVDTTTRDQETMDFEERKISFEANETTDNSSFSPVPPEKSEKLADNYEPIDIDGQKETGVWVHHPGSEVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNSTVSGSLNNDSSSPDNNPEEKHRMRTVRKGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNIRSENAKGMIAVKFVMDENISGFQTGKVQAEGGSTEGSGPESPASAKGNVKDMAKNIFKHAEKSARGLRHVLSCKSRKLKFKGESPTVPEREHESDSSDEESIAAQSPIDVIRTPVGSHAVVSGSNGSPGSGVNVVQIVPSNTNLDNEATAKITNEKDDPENACSPDRSSQEVVKSAEVEHDKEEMGAQIKEILSVCPTEESFK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
