Glyma13g33560 - SoyBase

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Report for Sequence Feature Glyma13g33560

Feature Type:	gene_model
Chromosome:	Gm13
Start:	35352463
stop:	35369181
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g33560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14570	AT	Annotation by Michelle Graham. TAIR10: glucan synthase-like 4 \| chr3:4892643-4902628 FORWARD LENGTH=1976	SoyBase	E_val: 0	ISS
GO:0006075	GO-bp	Annotation by Michelle Graham. GO Biological Process: (1->3)-beta-D-glucan biosynthetic process	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0052543	GO-bp	Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall	SoyBase	N/A	ISS
GO:0000148	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 1,3-beta-D-glucan synthase complex	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1,3-beta-D-glucan synthase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0916	KOG	1,3-beta-glucan synthase/callose synthase catalytic subunit	JGI		ISS
PTHR12741	Panther	UNCHARACTERIZED DUF605	JGI		ISS
PTHR12741:SF4	Panther	gb def: Hypothetical protein F10M23.90 (AT4g26750/F10M23 90) (Hypothetical protein AT4g2	JGI		ISS
PF02364	PFAM	1,3-beta-glucan synthase component	JGI		ISS
UniRef100_B9SVW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SVW5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B7C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B7C9 related cluster n=1 Tax=unknown RepID=UPI000233B7C9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g33560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g33560

Paralog	Evidence	Comments
Glyma15g39420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g33560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g261000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g33560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g33560

Limit To All Plant Sequences

>Glyma13g33560.1   sequence type=CDS   gene model=Glyma13g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAGATTGTGCCTGCAGAACCCATTGGTGGCATCTATTTCGAGCGAGGAGAGACATCAACAGCATCAGCATCAGCATCAGAGACACCCCATGTCACGTTGGCCATTACCAATGGAAGCAACAACGTTGAATATGTTCCAGAACCGTTTGACAGTGAAAGGTTGCCAACAGTTTTTGCTTCTGAAATCCAAAGGTTCCTTCGAGTGGCCAACTTGCTTGGAAAGGAAGAGCCTCGTGTTGCTTATCTTTGCCGTGTTCATGCCTTTGTGATTGCACACAACTTGGACAAAAATTCTAGTGGAAGGGGTGTTAGACAATTCAAAACTTCACTACTTCATCGACTTGAACAGGATGAGCATGTTACGAAAAAGAAGGGAACAAGTGACATTCGTGAACTTAAAAATGTTTACCGTGCTTACAGGGACTATTATATCAGACATGAGAAAGCATTTGATCTAGAACAAAGTCGAAGGGAGAGATTGATAAATGCCCGAGATATTGCTACTGTTATGTTTGAGGTGCTAAAGACAGTTACAGATCCAGCTAGTTCCCAGGCGCTTATCCAAGGAAATGCAATCCATAAAAAAACTGAATTTAGCATCCTTCCACTTGAGCAAGGATGCATTCAGCATGCGATTATGCAGAAGTCTGAGATTAAGGCTGCCATTGCAGTTATTCGCAATGTTCGTGGTTTACCCCCAGTGCAAGATTTCAAGAAGGACGGAGCCTTTGTGGATCTATTTGATTTTCTTCAGCATTGTTTTGGATTCCAGGAAGCCAATGTGGCCAACCAAAGGGAACATCTTATTCTACTCTTAGCCAATATGCAGACTCGTCAAACTCACAACCAGACATCTGTTTTGAAGTTAGGGGAAGGAGGTGTAGATGAATTGATGAGAAAGTTTTTCAAAAACTATACAAACTGGTGCAGTTTTTGGGAAAGGAAAAGCAATATTCGTTTACCTTTAGTGAAGCAGGAAGCCCAACAATATAAAATTTTATACATTGGGCTTTACCTTCTCATATGGGGGGAGACAGCTAATTTGCGGTTCATGCCAGAATGTCTCTGCTATATTTTTCATCATATGGCATATGAATTGCATGGAATTTTAAGTGGTGCTATCAGCTTAACAACATGGGAAAAGGTCATGCCGGCATATGGAGGAGAAACAGAGTCTTTCCTTAACAATGTTGTCACCCCAATATACACCGTTATAAGACAGGAAGTTGCCAATAGCAAAGGAGGGGCGGCTGATTATTCTGTATGGAGAAACTATGATGATCTTAATGAGTATTTCTGGTCCCCTGATTGTTTCAAAATTGGTTGGCCCATGCGTCTGGACCATGACTTTTTCTTTGTAAAGCCTAGAAATAAACCAGAACCAGATGTCAAGAATGCTCTTGTTGTGTCACCTGGTAAAACAAAAGAGAAGAAAAAGAGAGAAAAGAGGGATGAAGAAGAACCAGAGGATACAAGGGAGGAAATCCATGAACAACAATGGCTAGGAAAGACAAATTTTGTAGAGATCCGTTCATTCTGGCAAATTTTTAGATGCTTTGATAGAATGTGGAGCTTTTTTATTCTATCCCTTCAGGCCATAATAATCATTGCTTGTCATGACTTGGGATCTCCACTGCAGTTATTAGATGCTGTAGTATTTGAGGACATAATTACCATCTTCATTACCTCTGCATATCTTAAACTTATTCAAGCAATTTTAGACGTTGCTTTTATGTGGAAAGCAAGATATACCATGGAATCTTCTCAAAAGGTGAAACTTGTGGTGAAGCTGGTCTTAGCTACTATATGGACTATTGTTCTTCCTGTATGCTATGCTAATTCAAGAAGAAAATATACTTGCTATTCCACAAAGTATGGAAGCTTGGTTGAGGAATGGTGCTTTACTTCCTATATGGTTGCAGCAGCAATATATCTGACAACTAATGCAGTTGAAGTTTTGTTATTTTTTGTCCCTGCTGTTGCTAAGTATATTGAGGTCTCTAATTACAAGATATGCAAAGTTTTGTCTTGGTGGACTCAGCCTAGAATCTATGTTGGTCGGGGGATGCAAGAAGACCAGGTTTCAGTTTTTAAGTACACATTGTTTTGGATATTGGTGTTATCATGTAAATTTGTGTTTAGCTACAGTTTTGAGATAAAACCACTCATAGCACCTACCAGACAGATTATGAAAATTGGTGTAAAGAAGTATGAATGGCATGAGCTTTTTCCAAAAGTCAAAAGTAATGCAGGTGCAATTGTGGCTGTATGGAGCCCTGTAGTAATTGTATATTTTATGGACACACAAATTTGGTATTCTGTTTTCTGTACAATAATTGGTGGACTTTATGGTGTTTTGCATCACCTTGGTGAGATAAGGACACTTGGAATGCTGAGAAGTAAATTTGATTCCTTACCTTCAGCATTTAATGTCTGTCTTATCCCACCATCTTCCAAACGTGGTAAAAAGAAAAGAAAAGGTCTCCTCAGCAATATATTTCAAAAGTTGCCGGATGAAAAAAATGCCACTGCCAAATTTGTTGTGGTATGGAATCAAATTGTAAATCATCTTCGTCTTGAAGACTTAATTAGTAACAGAGAGATGGATTTGATGATGATGCCTGTGTCTTCAGAATTGTTTTCTGCTAAGGTTCGTTGGCCTGTTTTCCTATTAGCAAATAAGTTTTCTACAGCTTTGACCATTGCTAAAGATTTTGAGGGAAAGGAAGAGATTCTTGTCAAGAAAATTACAAAAGACAAATACATGTTTTATGCCGTAAGAGAGTGTTACCAGTCACTGAAATACGTGCTTGAAATTCTTGTTGTGGGTAGCATTGAGAAAAGGATCATATGTGATATACTAAGCAAAATTGAAAAGCATATCCAAGAAACAAGTCTTCTAAAGAACTTTAACTTGAAAGTTCTCCCAGCTCTACATGCTAAAGTTGTTGAGCTAGCTGAACTTCTGATGGAGGGAGATAAAGACCATCAGCACAAAGTTGTGAAGGCCTTGCTAGATGTGTTTGAACTTGTAACAAATGAGATGATGTTTGATTCCAGAATATTGGATATGTTCCACTTTCCCGAACAAAATGAGTGTGGCTTTGTCTATTTTAGAAATGATGATCAACTATTTGACAGTGTGGAAATGAATAGAGATTTCTATCCATTTGCCAAAGAGAATTCCATCCATTTTCCATTGCCAGAAAGTGGTCCTCTGATGGAAAAGATCAAGCGTTTCCATTTGTTGCTTACAGTAAAAGATACAGCGATGGATGTGCCTTCAAACTTAGATGCCCGTAGGCGCATATCATTCTTTGCTACTTCTCTGTTTACAGATATGCCTGATGCTCCAAAAGTGCACAATATGATGCCATTCTGTGTTATAACTCCACATTACATCGAGGACATTAATTTTTCGCTTAAGGAGCTTGGTTCAGATAAAGAGGAGGACTCCATCATCTTCTACATGCAAAAGATATATCCAGATGAATGGACAAATTTTTTGGAACGTATGGGTTGTGATAACCGTAAGAGTTTAGAAGATGAACACAAAACAGAAGATCTTAGACTGTGGGCTTCATTTCGGGGTCAGACACTAAGCAGAACAGTTAGAGGGATGATGTACTACAGAGAAGCCTTAAAATTACAAGCATTCCTTGACATGGCTGAAGAAGAAGATATTCTTGAGGGCTATGAGACTGCTGAAAGAGGTAACCGGGCATTGTTTGCTCGTCTAGAAGCACTAGCAGACATGAAATACACCTATGTCATTTCCTGTCAATCATTTGCATCACAAAAGGCTTCAAATGATCCTCGTTATCAAGATATGATCGACTTGATGATAAGGTATCCATCTCTTCGTGTTGCTTATGTTGAGGAAAAAGAGGAGATAGTGCAGGGTAAACCTCACAAAGTATATTCATCTAAACTGGTTAAAGTTGTCAATGGTTATGAACAGACAATATATCAAATAAAACTACCAGGCCCACCACATCTTGGAGAAGGGAAGCCTGAAAACCAAAACAATGCAATAATATTCACTCGTGGTGAAGCACTCCAAACAATTGATATGAACCAAGATAATTACTTGGAAGAAGCTCTTAAAATGAGAAACCTTCTCCAAGAATTTCTTCGGCGCCAAGGAAGGCGTCCTCCTACAATACTTGGTTTAAGGGAACACATTTTCACAGGAAGTGTGTCTTCTCTGGCTGGGTTCATGTCATATCAAGAGACCAGCTTTGTAACTATTGGTCAAAGGGTTCTGGCTAATCCTCTCAGGGTGCGGTTCCACTATGGCCATCCAGATGTATTTGATAGGGTTTTTCATATCACGAGAGGAGGAATAAGCAAAGCATCTAAAACAATTAACTTGAGTGAGGATGTTTTTGCTGGATTTAATTCAACTTTAAGACGGGGATGTATTTCCTACCATGAATACTTGCAAATTGGCAAAGGTCGTGATGTAGCTCTAAACCAGATCTCAAAATTTGAAGCCAAGGTAGCAAATGGAAACTGTGAGCAAACTATAAGCCGTGACATGTTTCGCCTTGGGCGGCAATTTGATTTTTTCCGGATGCTATCATGCTATTTCACTACAGTTGGATTTTACTTCAGCAGCTTGATTTCAGTGATAGGAATCTATGTATTTCTCTACGGGCAGTTATACCTGGTTCTTAGTGGATTGGAAAGAGCACTTATCATTGAGGCTCGAATCAAGAATGTACAGTCCTTAGAAACGGCTCTTGCCTCCCAGTCATTCATACAACTTGGACTTCTGACAGGCTTACCCATGGTGATGGAAATAGGACTTGAAAGAGGTTTCCTCACAGCCCTAAAGGACTTTGTCCTTATGCAATTGCAATTGGCTGCTGTTTTCTTCACTTTCGCCCTAGGAACGAAAACACATTACTATGGCCGAACGCTTTTGCACGGGGGTGCAAAGTACAGACCGACAGGGCGCAAAGTTGTATTCCATGCTAGCTTCACTGAGAATTACAGATTGTATTCAAGAAGCCACTTTGTTAAGGCATTTGAGCTATTGCTGCTGTTGATTGTTTATAACATGTTCAGGAGGTCCTATCAAAGTAGCATGGCATACGTGTTGATAACATATGCCATTTGGTTCATGTCATTGACTTGGTTGTGTGCACCTTTTCTTTTTAACCCTGCTGGGTTCAGTTGGACCAAGACAGTAGATGATTGGAAAGAGTGGAATAAATGGATCAGACAACAGGGTGGTATAGGAATTCAACAAGATAGAAGTTGGCATTCTTGGTGGCACGATGAGCAAGCTCATCTTCGCTGGTCAGGTTTTGGCTCTAGGTTGACTGAAGTATTGCTTTCTCTTCGTTTTTTCATCTATCAGTATGGTTTGGTCTATCACCTAGACATCTCTCAGCATAGCAAAAATTTTCTTGTTTATGTCCTTTCTTGGATTGTGATTGTTGCAATTTTCCTCTTGGTGAAGGCTGTTAACATGGGAAGGCAACTACTCAGTGCTAATTATCAGCTTGGATTCAGACTTTTCAAAGCATTCTTGTTCCTGGCTGTTCTTGCCATCATCTTTACTCTTTCTGTTATATGCGAGTTGTCGTTGACGGACATTTTCGTTTGCTGTCTAGCATTCATGCCAACCGCGTGGGGATTGATAATGATTGCACAAGCTGCAAGGCCAAAAATAGAGCACACAGGGTTGTGGGACTTCACACGTGCACTTGCTAGAGAATTTGATTATGGAATGGGGATAGTTCTTTTTGGACCTATTGCTATTTTGGCGTGGTTGCCAATCATTAAAGCCTTCCATGCTCGTTTTCTTTTCAATGAGGCATTCAAAAGGCACTTGCAAATCCAACCAATTCTATCAGGAAAAAAGAAGAAGCACAGAACTTGA

Predicted protein sequences of Glyma13g33560

Limit To All Plant Sequences

>Glyma13g33560.1   sequence type=predicted peptide   gene model=Glyma13g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEIVPAEPIGGIYFERGETSTASASASETPHVTLAITNGSNNVEYVPEPFDSERLPTVFASEIQRFLRVANLLGKEEPRVAYLCRVHAFVIAHNLDKNSSGRGVRQFKTSLLHRLEQDEHVTKKKGTSDIRELKNVYRAYRDYYIRHEKAFDLEQSRRERLINARDIATVMFEVLKTVTDPASSQALIQGNAIHKKTEFSILPLEQGCIQHAIMQKSEIKAAIAVIRNVRGLPPVQDFKKDGAFVDLFDFLQHCFGFQEANVANQREHLILLLANMQTRQTHNQTSVLKLGEGGVDELMRKFFKNYTNWCSFWERKSNIRLPLVKQEAQQYKILYIGLYLLIWGETANLRFMPECLCYIFHHMAYELHGILSGAISLTTWEKVMPAYGGETESFLNNVVTPIYTVIRQEVANSKGGAADYSVWRNYDDLNEYFWSPDCFKIGWPMRLDHDFFFVKPRNKPEPDVKNALVVSPGKTKEKKKREKRDEEEPEDTREEIHEQQWLGKTNFVEIRSFWQIFRCFDRMWSFFILSLQAIIIIACHDLGSPLQLLDAVVFEDIITIFITSAYLKLIQAILDVAFMWKARYTMESSQKVKLVVKLVLATIWTIVLPVCYANSRRKYTCYSTKYGSLVEEWCFTSYMVAAAIYLTTNAVEVLLFFVPAVAKYIEVSNYKICKVLSWWTQPRIYVGRGMQEDQVSVFKYTLFWILVLSCKFVFSYSFEIKPLIAPTRQIMKIGVKKYEWHELFPKVKSNAGAIVAVWSPVVIVYFMDTQIWYSVFCTIIGGLYGVLHHLGEIRTLGMLRSKFDSLPSAFNVCLIPPSSKRGKKKRKGLLSNIFQKLPDEKNATAKFVVVWNQIVNHLRLEDLISNREMDLMMMPVSSELFSAKVRWPVFLLANKFSTALTIAKDFEGKEEILVKKITKDKYMFYAVRECYQSLKYVLEILVVGSIEKRIICDILSKIEKHIQETSLLKNFNLKVLPALHAKVVELAELLMEGDKDHQHKVVKALLDVFELVTNEMMFDSRILDMFHFPEQNECGFVYFRNDDQLFDSVEMNRDFYPFAKENSIHFPLPESGPLMEKIKRFHLLLTVKDTAMDVPSNLDARRRISFFATSLFTDMPDAPKVHNMMPFCVITPHYIEDINFSLKELGSDKEEDSIIFYMQKIYPDEWTNFLERMGCDNRKSLEDEHKTEDLRLWASFRGQTLSRTVRGMMYYREALKLQAFLDMAEEEDILEGYETAERGNRALFARLEALADMKYTYVISCQSFASQKASNDPRYQDMIDLMIRYPSLRVAYVEEKEEIVQGKPHKVYSSKLVKVVNGYEQTIYQIKLPGPPHLGEGKPENQNNAIIFTRGEALQTIDMNQDNYLEEALKMRNLLQEFLRRQGRRPPTILGLREHIFTGSVSSLAGFMSYQETSFVTIGQRVLANPLRVRFHYGHPDVFDRVFHITRGGISKASKTINLSEDVFAGFNSTLRRGCISYHEYLQIGKGRDVALNQISKFEAKVANGNCEQTISRDMFRLGRQFDFFRMLSCYFTTVGFYFSSLISVIGIYVFLYGQLYLVLSGLERALIIEARIKNVQSLETALASQSFIQLGLLTGLPMVMEIGLERGFLTALKDFVLMQLQLAAVFFTFALGTKTHYYGRTLLHGGAKYRPTGRKVVFHASFTENYRLYSRSHFVKAFELLLLLIVYNMFRRSYQSSMAYVLITYAIWFMSLTWLCAPFLFNPAGFSWTKTVDDWKEWNKWIRQQGGIGIQQDRSWHSWWHDEQAHLRWSGFGSRLTEVLLSLRFFIYQYGLVYHLDISQHSKNFLVYVLSWIVIVAIFLLVKAVNMGRQLLSANYQLGFRLFKAFLFLAVLAIIFTLSVICELSLTDIFVCCLAFMPTAWGLIMIAQAARPKIEHTGLWDFTRALAREFDYGMGIVLFGPIAILAWLPIIKAFHARFLFNEAFKRHLQIQPILSGKKKKHRT*

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