SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33630 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3506) | chr4:16155560-16159094 FORWARD LENGTH=684 | SoyBase | E_val: 0 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0000304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to singlet oxygen | SoyBase | N/A | ISS |
| GO:0010039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to iron ion | SoyBase | N/A | ISS |
| GO:0010343 | GO-bp | Annotation by Michelle Graham. GO Biological Process: singlet oxygen-mediated programmed cell death | SoyBase | N/A | ISS |
| GO:0055072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0042651 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| PF12014 | PFAM | Domain of unknown function (DUF3506) | JGI | ISS | |
| UniRef100_G7JV40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein EXECUTER n=1 Tax=Medicago truncatula RepID=G7JV40_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B65C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B65C related cluster n=1 Tax=unknown RepID=UPI000233B65C | SoyBase | E_val: 0 | ISS |
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Glyma13g32970 not represented in the dataset |
Glyma13g32970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g256400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g32970.1 sequence type=CDS gene model=Glyma13g32970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACATTGACACATCCATCCATGGCTTCCCTATCATCATCTCGAACCACAACACAGTTTAACTTACCAAACTCCAAATTGTGTTCCTCTCTTCCATTCTCATTCTCAACAAGACCCTCATTTCTTTTCTCTTCCCTCAACAAATTCTATTCCTACTCCAATTCTCTGCGCTGCTCTGCCTCCGTGGAAGACACCGAATGGGATTGGGAACGATGGCAAAACCATTTCCACGTGGTCGATGAACAAGAGCTTCTCCTCGACATTCTCAAGTCTCGCTTAGGTGATGCTCTGCGTTTGGAGGATTATGAAGATGCAGCTACACTTAAGGTGGCCATTGCCACTGTAGCTACCAAGGACACTGTTGGAACAGCCATATCTCATCTCAAGAGGGCCATAGAGGAAGAGCGGTACAGTGATGCAGCTTTCTTGAGAGATGAAGCTGGCACTGGACTTGTGGGTTGGTGGGCTGGAATGTCAAAAGACATTAATGATCCACATGGTCTAATTATTCGCATAACTCCAGAGCACGGAAGATATGTAGCAAGGAGTTATAGTCCTAGGCAACTTGCTACTTCTGCTGCTGGTGTTCCTCTATTTGAATTTTTTCTTACGAAGAATAAAAATGGTGAATTTAAGTCACAGGTTGTGTACTTAAAGCGGAGAGAGGCTTTCCATACTCCCCCGACAACATCCTCTAAAGCGTTGGATGCTGCTGAGAGATTGAGATCAGTGGAGTCACCTGAAGATAGAAGTGAGCTAGTTGTTGGGAGTCCTGAAGATCCTGAGGTTGTTGATGATAGGAATGATAACTCTGATCCATCTGAGGCAATGCCTGGATTTCAGAATGTCTTGAAAGATACAATTCCTGGTGTAAAGATGAAGGTTTTGAAGGTCACAACTCCAGACAAGGTAGACAACGATACAATATCTAAGGTGATTGAGCAGATAACTGATGATGAAGGGAATGAAGATGAAGATTCAGATGAATGTGCTGGTAAGGACAATGAGACAGAAAATCCAGAACTGAGTGATATCAAAACTGAAACTGATGACGAGATTGAATTAAATTCTAGTGTGGAATCTTTTGAACGTGAAGAACAAAATAAAATTGCAGTCAAAGTTATCGTTGGTGGTCTTGTTCAGAAACTTCCCAGCAGTTTGACTACTAGAAATTTGCTTCGAGTTCCTGCTAAGCTGGAGAAAACCGGACAAGGTTCATTTTCCCTTACCTTTGAAAAGGTAGCCAATCAACAGGTTGGTCATGGCAAAGGGAAGCCTTCATCAGATAAATCAACAAAAATTCAACGCCAAAATAGTGTTGATGGTGTTATGGTTAATCTTGCTAAGTTGATTGGAAGGGGGAAGGTACCCTCGAAGGTGCTGAAAGATTTGGGAGAATTAATAAGTCTTAGTCTTAGCCGGGCTTGGAACCATGAACGATTGTCAGGGTCAACAATGTTCAGTCGCATTGAAATACCAACTTCTTTAGATCCTTTAAATGGTCTATACATTGGTGCACATGGGCTTTACTCCTCTGAAGTAATTCAACTGAGATGTAGATATGGCCAATGGCAAGAAGATGGTGGGCCTAAGGAGCCTTCTGATCTTGAGTTTTGTGAGTATGTGGAAGCTTTGAAATTGACTGGGGATTCTTATGTACCAGTTGGCCAGGTAGCATTTCGAGCAAAAGTAGGAAAGAGGTATCAGCTTCCTCTTAAGGGAATAATTCCTAAAGAATTTGGAGTGATTGCACGCTATAAAGGTCAAGGGAGGCTTGCAGAGCCAAGATTCGAGAATCCTCGATGGGTTGACGGTGAACTTGTGATTCTAGATGGAAAGTACATCAAAGCAGGTCTTGTTATTGGATTTATGTACTTGACCCCTGAGAATCCTTTTTTGGTCCTCTTCAATCGGCTGAGGCTTCAGAAATAG
>Glyma13g32970.1 sequence type=predicted peptide gene model=Glyma13g32970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLTHPSMASLSSSRTTTQFNLPNSKLCSSLPFSFSTRPSFLFSSLNKFYSYSNSLRCSASVEDTEWDWERWQNHFHVVDEQELLLDILKSRLGDALRLEDYEDAATLKVAIATVATKDTVGTAISHLKRAIEEERYSDAAFLRDEAGTGLVGWWAGMSKDINDPHGLIIRITPEHGRYVARSYSPRQLATSAAGVPLFEFFLTKNKNGEFKSQVVYLKRREAFHTPPTTSSKALDAAERLRSVESPEDRSELVVGSPEDPEVVDDRNDNSDPSEAMPGFQNVLKDTIPGVKMKVLKVTTPDKVDNDTISKVIEQITDDEGNEDEDSDECAGKDNETENPELSDIKTETDDEIELNSSVESFEREEQNKIAVKVIVGGLVQKLPSSLTTRNLLRVPAKLEKTGQGSFSLTFEKVANQQVGHGKGKPSSDKSTKIQRQNSVDGVMVNLAKLIGRGKVPSKVLKDLGELISLSLSRAWNHERLSGSTMFSRIEIPTSLDPLNGLYIGAHGLYSSEVIQLRCRYGQWQEDGGPKEPSDLEFCEYVEALKLTGDSYVPVGQVAFRAKVGKRYQLPLKGIIPKEFGVIARYKGQGRLAEPRFENPRWVDGELVILDGKYIKAGLVIGFMYLTPENPFLVLFNRLRLQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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